←Back to structures

hypothetical_protein_2

Euk-Vir

Beihai_victori-like_virus_1

hypothetical_protein_2__YP_009336604__Beihai_victori-like_virus_1__1922737

Identity

Accession:: YP_009336604 ↗
Protein ID:: hypothetical_protein_2
Kingdom:: euk

Quality

75.7 mean pLDDT

Taxonomy

Beihai_victori-like_virus_1

TaxID: 1922737

Cluster

View cluster (56 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-55

PDB

D2 medium residues 56-135

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4x28A01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.53	36.0	3.31e-01	71.2%	97.3%
5f42A02	1.20.1180.10	Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain	0.53	36.0	3.65e-01	72.5%	70.7%
7dniB01	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.50	38.0	3.72e-01	81.2%	91.0%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3186807	509.1.1.1 ↗	alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH	0.58	44.0	4.19e-01	82.5%	85.3%

D3 medium residues 173-223_656-704

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7y4rB01	1.20.1290.10	Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like	0.55	38.0	3.75e-01	78.0%	66.0%
3cnhB02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.51	32.0	3.79e-01	88.0%	94.1%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3611276	4953.1.1.0 ↗	beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like	0.56	46.0	4.62e-01	100.0%	88.0%
3784532	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.56	32.0	3.28e-01	73.0%	57.9%
3713235	138.1.1.2 ↗	alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C	0.56	31.0	3.24e-01	100.0%	56.7%
3449672	138.1.1.2 ↗	alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C	0.55	30.0	3.09e-01	100.0%	52.6%
4966635	4095.1.1.0 ↗	alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain	0.51	39.0	3.27e-01	81.0%	86.9%

D4 medium residues 224-296

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02123.22 best	RdRP_4	23.6	3.20e-05	100.0%	15.0%

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ibyD02	1.10.287.1770	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.67	54.0	5.13e-01	100.0%	75.0%
4dxwA02	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.63	56.0	4.90e-01	100.0%	74.1%
2gfhA02	1.20.120.710	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain	0.59	51.0	4.88e-01	95.9%	95.3%
1dcnA03	1.10.40.30	Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain)	0.56	45.0	4.57e-01	87.7%	88.9%
3abbA00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.55	46.0	2.98e-01	97.3%	65.5%
3qsgA02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.55	42.0	3.77e-01	89.0%	74.8%
3t0yA01	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.54	42.0	4.45e-01	89.0%	93.9%
2vixA02	1.10.150.630	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 ›	0.53	45.0	4.29e-01	100.0%	93.3%
4fzlA01	1.10.150.790	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 ›	0.51	45.0	4.24e-01	94.5%	89.7%
1sxjD03	1.20.272.10	Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 ›	0.51	37.0	3.49e-01	78.1%	68.1%
2d5bA03	1.10.730.10	Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1	0.51	36.0	2.84e-01	75.3%	78.0%
1hxiA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.50	40.0	3.44e-01	84.9%	73.2%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3722031	3985.1.1.1 ↗	alpha bundles › CFEM domain (contains eight cysteines) › CFEM domain (contains eight cysteines) › CFEM domain (contains eight cysteines) › CFEM	0.53	40.0	3.99e-01	100.0%	78.7%
3992442	592.7.1.1 ↗	alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › GIPC1_GH2	0.52	44.0	4.26e-01	100.0%	87.1%

D5 medium residues 297-317_346-450_527-565

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009336713__Beihai_toti-like_virus_4__1922734__D167-187_213-323_360-427

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02123.22 best	RdRP_4	71.3	1.10e-19	75.8%	22.6%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1mukA02	3.90.1850.10	Alpha Beta › Alpha-Beta Complex › RNA-directed RNA polymerase lambda-3 › RNA-directed RNA polymerase lambda-3	0.70	64.0	4.49e-01	98.2%	59.4%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5368	304.48.1.23 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_5	0.70	64.0	4.81e-01	98.2%	76.5%
4516798	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.63	52.0	3.76e-01	87.3%	44.8%
4071235	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.63	52.0	3.65e-01	87.3%	40.4%
3792091	304.48.1.25 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RRM_4	0.60	49.0	3.86e-01	87.3%	55.1%
3615272	304.48.1.25 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RRM_4	0.59	49.0	3.71e-01	87.3%	55.3%
3598902	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.59	49.0	3.71e-01	87.3%	56.1%
3960648	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.55	45.0	3.65e-01	86.7%	64.6%

D6 medium residues 318-345_451-473_491-526_566-589_643-655

PDB

Domain cluster: rep: RNA_directed_RNA_polymerase__YP_009094185__Ustilaginoidea_virens_RNA_virus_L__1561171__D256-290_421-459_472-493

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02123.22 best	RdRP_4	39.1	6.70e-10	88.7%	25.8%

D7 medium residues 474-490_590-642

PDB

Domain cluster: rep: ORF2__YP_004581250__Piscine_myocarditis_virus_AL_V-708__912320__D347-428

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02123.22 best	RdRP_4	46.0	5.40e-12	87.1%	11.2%

D8 medium residues 705-822

PDB