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hypothetical_protein_2

Euk-Vir

Changjiang_crawfish_virus_2

hypothetical_protein_2__YP_009336730__Changjiang_crawfish_virus_2__1922766

Identity

Accession:
YP_009336730 ↗
Protein ID:
hypothetical_protein_2
Kingdom:
euk

Quality

70.1 mean pLDDT

Taxonomy

Changjiang_crawfish_virus_2

TaxID: 1922766

Cluster

View cluster (41 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 40-214
PDB
Domain cluster: rep: structural_polyprotein__YP_009333175__Bastrovirus-like_virus_VietNam_Bat_17819_21__1906170__D141-305
D2 high residues 344-385_398-537
PDB
Domain cluster: rep: structural_polyprotein__YP_009333175__Bastrovirus-like_virus_VietNam_Bat_17819_21__1906170__D141-305
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF08762.17 best CRPV_capsid 23.0 8.00e-05 80.8% 61.8%
PF00073.27 Rhv 46.4 5.10e-12 59.3% 55.0%
D3 medium residues 581-593_611-658_705-732_764-795
PDB
Domain cluster: rep: hypothetical_protein_2__YP_009337154__Wenzhou_picorna-like_virus_20__1923605__D660-739_788-804_846-876
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3napC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.73 67.0 4.99e-01 96.7% 80.1%
1b35A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.73 69.0 5.23e-01 100.0% 83.1%
3napA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.73 68.0 5.18e-01 100.0% 78.0%
8b38A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.73 59.0 4.69e-01 84.3% 95.6%
1b35C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.73 69.0 5.08e-01 100.0% 75.2%
1tme300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.71 64.0 5.01e-01 94.2% 81.7%
3cjiB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.70 63.0 4.89e-01 94.2% 82.4%
3vbhC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.70 63.0 4.83e-01 94.2% 81.4%
5j98B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.69 60.0 4.56e-01 90.9% 77.7%
5aooC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.69 60.0 4.81e-01 90.9% 80.9%
5aca300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.69 61.0 4.87e-01 92.6% 81.1%
4qpiC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.69 61.0 4.68e-01 92.6% 78.5%
5k0uB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.69 61.0 4.77e-01 93.4% 80.4%
5mqcB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 58.0 4.53e-01 90.1% 74.9%
4qpiB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 57.0 4.63e-01 90.9% 78.3%
3cjiA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.66 57.0 4.40e-01 92.6% 87.6%
6sk6A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.66 59.0 4.41e-01 95.0% 76.2%
1cov100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 59.0 4.42e-01 95.0% 75.5%
1mec100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 60.0 4.58e-01 100.0% 88.7%
4rs5A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 59.0 4.69e-01 95.0% 89.6%
5c8cB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 56.0 4.13e-01 90.9% 69.6%
2ws9100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.64 57.0 4.41e-01 93.4% 81.7%
1fmd100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.64 56.0 4.75e-01 92.6% 75.4%
3napB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.64 56.0 4.32e-01 92.6% 71.7%
2gh8A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.63 54.0 4.48e-01 90.1% 83.7%
3d4rE01 2.40.128.400 Mainly Beta › Beta Barrel › Lipocalin › 0.56 22.0 2.62e-01 80.2% 48.8%
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.52 26.0 2.93e-01 73.6% 58.9%
3dv8A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 34.0 3.35e-01 92.6% 60.4%
2fmyA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 31.0 3.06e-01 92.6% 54.4%
2v72A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 36.0 3.49e-01 91.7% 65.0%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2389608 10.2.1.44 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CRPV_capsid 0.75 67.0 5.19e-01 94.2% 83.1%
140024 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.73 67.0 4.99e-01 96.7% 80.1%
1213 10.2.1.44 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CRPV_capsid 0.73 69.0 5.23e-01 100.0% 83.1%
2099184 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.73 67.0 4.89e-01 97.5% 78.7%
140026 10.2.1.44 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CRPV_capsid 0.73 68.0 5.18e-01 100.0% 78.0%
2440135 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.73 65.0 5.17e-01 95.0% 85.6%
2439648 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.72 65.0 4.83e-01 94.2% 75.5%
2044958 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.72 65.0 4.96e-01 95.0% 79.1%
2983138 10.2.1.88 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv, Calici_coat 0.70 62.0 4.85e-01 93.4% 80.7%
1866052 10.2.1.44 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CRPV_capsid 0.69 63.0 5.14e-01 96.7% 80.8%
1405130 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.69 61.0 4.68e-01 92.6% 78.5%
1933849 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.69 61.0 4.87e-01 93.4% 81.2%
2414126 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.68 61.0 4.69e-01 93.4% 75.9%
4877367 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.64 56.0 4.83e-01 92.6% 76.1%
2884840 10.2.1.50 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.63 57.0 4.19e-01 95.9% 69.3%
1175671 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.51 34.0 3.37e-01 92.6% 61.8%
3795021 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.50 35.0 3.23e-01 95.0% 53.0%
D4 medium residues 594-610_659-678_693-704_733-763
PDB