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hypothetical_protein_2

Euk-Vir

Beihai_tombus-like_virus_9

hypothetical_protein_2__YP_009336849__Beihai_tombus-like_virus_9__1922730

Identity

Accession:
YP_009336849 ↗
Protein ID:
hypothetical_protein_2
Kingdom:
euk

Quality

82.2 mean pLDDT

Taxonomy

Beihai_tombus-like_virus_9

TaxID: 1922730

Cluster

View cluster (450 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 334-477
PDB
Domain cluster: rep: hypothetical_protein_2__YP_009336956__Hubei_tombus-like_virus_11__1923257__D331-462
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x2nA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 28.0 4.09e-01 93.1% 95.0%
3ajmB02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.61 38.0 3.96e-01 97.9% 66.2%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.60 34.0 3.78e-01 95.1% 69.3%
5nl6A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 39.0 4.36e-01 97.2% 89.8%
2odvA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 39.0 4.38e-01 97.9% 93.8%
1j1jA01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.55 35.0 3.63e-01 96.5% 67.4%
1s35A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 39.0 4.31e-01 98.6% 93.6%
4o8sA02 1.20.58.1790 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › JHP933, helical tail domain 0.54 37.0 4.18e-01 70.1% 95.3%
1rtwB00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.53 42.0 3.72e-01 84.0% 80.3%
2fd5A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 34.0 3.56e-01 97.2% 73.5%
2ijqA00 1.10.3450.10 Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › TTHA0068-like 0.50 38.0 3.79e-01 94.4% 77.2%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.67 61.0 5.44e-01 100.0% 76.7%
3015208 141.1.1.8 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2 0.54 46.0 3.49e-01 93.1% 72.9%
3434381 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 39.0 3.33e-01 75.7% 60.4%
3594402 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.52 30.0 3.02e-01 86.8% 54.0%
3888824 601.1.2.11 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › CD20 0.51 35.0 3.51e-01 97.9% 66.7%
3855274 109.4.1.22 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N 0.51 43.0 4.02e-01 91.0% 86.3%
3683342 109.4.1.629 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF629 0.51 45.0 3.35e-01 97.9% 83.7%
D2 medium residues 1-41_85-156_234-252
PDB
Domain cluster: rep: hypothetical_protein_3__YP_009345007__Wuhan_spider_virus_8__1923757__D1-105_147-200
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00998.29 best RdRP_3 34.0 2.00e-08 89.4% 19.1%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5367 304.48.1.8 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.75 67.0 4.76e-01 95.5% 73.3%
1279063 304.48.1.13 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Flavi_NS5 0.74 67.0 4.59e-01 97.0% 64.8%
None — 0.73 65.0 4.67e-01 95.5% 71.6%
2541763 304.48.1.8 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.72 65.0 4.64e-01 97.0% 73.1%
1173784 304.48.1.8 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.72 66.0 4.67e-01 97.0% 71.5%
217141 304.48.1.15 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3 0.69 62.0 4.49e-01 96.2% 69.7%
D3 medium residues 42-84_199-233
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mc1A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.63 26.0 2.78e-01 82.1% 37.3%
2g8lA02 1.10.285.20 Mainly Alpha › Orthogonal Bundle › Glutamate Dehydrogenase; Chain A, domain 3 › Uncharacterised protein PF01937, DUF89, domain 2 0.53 28.0 3.00e-01 100.0% 56.9%
2uxwA02 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.51 43.0 3.79e-01 97.4% 77.7%
4gxbA02 1.20.80.60 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.50 33.0 3.66e-01 76.9% 83.9%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.50 39.0 3.71e-01 84.6% 89.1%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3842813 4177.1.1.140 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › DUF4456 0.58 44.0 3.29e-01 80.8% 83.6%
D4 medium residues 157-198_253-333
PDB
Domain cluster: rep: hypothetical_protein_3__YP_009336965__Hubei_tombus-like_virus_14__1923260__D118-161_217-302
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00998.29 best RdRP_3 47.0 2.30e-12 66.7% 17.3%