hypothetical_protein_2

Euk-Vir

Hubei_toti-like_virus_18

hypothetical_protein_2__YP_009336932__Hubei_toti-like_virus_18__1923306

Identity

74.8 mean pLDDT

Orthornavirae› Duplornaviricota› Chrymotiviricetes› Ghabrivirales› Lebotiviridae› Lebotivirus› Hubei_toti-like_virus_18

TaxID: 1923306

View cluster (56 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 124-259

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009333170__Hubei_toti-like_virus_19__1923307__D23-133

D2 medium residues 260-280_306-413_456-514

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009336713__Beihai_toti-like_virus_4__1922734__D167-187_213-323_360-427

D3 medium residues 281-305_414-455_515-599

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009336893__Sanxia_water_strider_virus_20__1923404__D285-322_387-475

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02123.22 best	RdRP_4	34.7	1.40e-08	56.6%	14.8%

D4 medium residues 600-711

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009333170__Hubei_toti-like_virus_19__1923307__D476-560

D5 medium residues 712-768

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2w43A02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.61	44.0	4.44e-01	77.2%	89.5%
3b0bB00	1.10.20.10	Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A	0.59	39.0	3.42e-01	70.2%	45.4%
4pxoA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.53	37.0	2.96e-01	77.2%	61.1%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3875839	101.1.2.101 ↗	alpha arrays › HTH › HTH › winged helix domain › Cdc6_C	0.61	44.0	3.52e-01	77.2%	37.4%
3479163	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.61	45.0	3.44e-01	77.2%	33.8%
3201450	109.4.1.1316 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf, HAT_PRP39_N, HAT_PRP39_C	0.55	42.0	2.47e-01	86.0%	31.1%

D6 medium residues 769-908

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009072448__Leptopilina_boulardi_Toti-like_virus__1353795__D653-791

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2fh0A00	1.10.8.140	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PDCD5, DNA-binding domain	0.60	32.0	4.00e-01	73.6%	86.4%