hypothetical_protein_2

Euk-Vir

Hubei_tombus-like_virus_21

hypothetical_protein_2__YP_009336978__Hubei_tombus-like_virus_21__1923268

Identity

83.4 mean pLDDT

Hubei_tombus-like_virus_21

TaxID: 1923268

View cluster (25 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 336-451

PDB

Domain cluster: rep: hypothetical_protein_3__YP_009333294__Sanxia_tombus-like_virus_7__1923391__D361-460

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5c4yA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.60	41.0	3.89e-01	95.7%	59.6%
3tp3A02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.58	41.0	3.77e-01	98.3%	56.8%
4ceiA03	6.10.250.2380	Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.57	33.0	3.40e-01	94.0%	58.9%
2fd5A02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.55	38.0	3.64e-01	95.7%	61.4%
3qhbA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.54	46.0	4.03e-01	94.0%	71.5%
3ay5A01	1.20.1420.10	Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain	0.53	39.0	3.75e-01	100.0%	67.7%
3sk9A00	1.10.3210.30	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 ›	0.51	42.0	3.45e-01	92.2%	63.5%
1h6gA01	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.51	35.0	3.50e-01	95.7%	68.1%
2cwyA00	1.10.3450.10	Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › TTHA0068-like	0.51	38.0	4.21e-01	94.0%	98.9%
3lomA00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.50	39.0	3.00e-01	82.8%	94.4%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3959588	191.1.1.0 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain	0.59	38.0	3.72e-01	94.8%	60.0%
3278778	191.1.1.0 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain	0.56	36.0	3.48e-01	89.7%	55.6%

D2 medium residues 1-62_114-139_241-265

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337688__Beihai_tombus-like_virus_7__1922728__D528-588_642-697_774-796

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2hfzA01	3.30.70.2840	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Flavivirus RNA-directed RNA polymerase, thumb domain	0.53	32.0	3.51e-01	92.9%	74.2%

D3 medium residues 63-113_140-167_208-240

PDB

Domain cluster: rep: hypothetical_protein_3__YP_009345007__Wuhan_spider_virus_8__1923757__D1-105_147-200

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3jw8B00	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.54	39.0	2.94e-01	75.0%	77.0%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3928986	193.1.1.19 ↗	alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › Cluap1	0.55	39.0	4.02e-01	75.9%	78.1%
4557831	4106.1.1.1 ↗	few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC	0.54	41.0	3.66e-01	80.4%	79.4%
3315059	109.4.1.420 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR	0.53	30.0	3.22e-01	100.0%	62.0%
4253860	2004.1.1.77 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87,HerA_C	0.51	37.0	2.64e-01	75.0%	84.5%
3320740	109.4.1.883 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2	0.51	29.0	2.56e-01	99.1%	36.4%

D4 medium residues 168-207_266-335

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181