hypothetical_protein_2

Euk-Vir

Changjiang_polero-like_virus_1

hypothetical_protein_2__YP_009337098__Changjiang_polero-like_virus_1__1922799

Identity

91.7 mean pLDDT

Changjiang_polero-like_virus_1

TaxID: 1922799

View cluster (85 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 321-375

PDB

Domain cluster: rep: putative_protein_P2__YP_001931931__Tobacco_vein_distorting_virus__192203__D1031-1055_1057-1076_1079-1084

D2 medium residues 1-82_112-138

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1kxpD02	1.10.246.10	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 ›	0.57	37.0	4.05e-01	82.6%	80.7%
4cxfA01	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.53	35.0	3.86e-01	82.6%	83.9%
3sykA02	1.10.8.60	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.53	32.0	3.56e-01	78.0%	74.4%
2o7gA00	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.53	35.0	3.80e-01	83.5%	83.0%
1hr7C02	3.30.830.10	Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like	0.53	37.0	2.95e-01	72.5%	65.8%
3ieeA02	1.20.58.820	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Uncharacterised protein PF12889, C-terminal DUF3829	0.52	31.0	3.23e-01	77.1%	62.1%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4335830	4041.1.1.1 ↗	a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2	0.56	39.0	2.96e-01	72.5%	53.8%
3781737	192.4.1.23 ↗	alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › DUF3818	0.55	39.0	3.70e-01	99.1%	60.7%
3769571	1076.1.1.6 ↗	alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › DUF2053	0.54	41.0	3.26e-01	80.7%	53.1%
4412930	149.1.1.1 ↗	alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450	0.54	44.0	3.01e-01	89.0%	61.3%
3278713	191.1.1.17 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_13	0.52	39.0	3.79e-01	80.7%	100.0%

D3 medium residues 83-111_191-249

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009333455__Beihai_shrimp_virus_4__1922670__D191-224_326-342

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02123.22 best	RdRP_4	37.4	2.10e-09	69.3%	16.3%
PF02123.22	RdRP_4	24.3	2.00e-05	38.6%	7.7%

D4 medium residues 139-190_250-320

PDB

Domain cluster: rep: polyprotein_P2a-P2b__YP_009140472__Cymbidium_chlorotic_mosaic_virus__1602124__D662-698_766-823

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02123.22 best	RdRP_4	57.9	1.30e-15	53.7%	15.7%
PF02123.22	RdRP_4	27.4	2.30e-06	44.7%	13.1%