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hypothetical_protein_2

Euk-Vir

Wenling_tombus-like_virus_1

hypothetical_protein_2__YP_009337158__Wenling_tombus-like_virus_1__1923543

Identity

Accession:: YP_009337158 ↗
Protein ID:: hypothetical_protein_2
Kingdom:: euk

Quality

85.8 mean pLDDT

Taxonomy

Wenling_tombus-like_virus_1

TaxID: 1923543

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 324-463

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009336956__Hubei_tombus-like_virus_11__1923257__D331-462

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	48.3	9.20e-13	93.6%	27.4%

D2 medium residues 5-35_61-145_209-243

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337190__Wenling_tombus-like_virus_2__1923544__D9-107_145-194

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	75.3	5.90e-21	70.9%	18.5%

D3 medium residues 36-60_187-208_244-267

PDB

Domain cluster: representative

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2wzkA03	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.61	40.0	3.46e-01	98.6%	43.6%
3tklB01	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.61	36.0	3.85e-01	88.7%	67.7%
3n98A01	3.20.110.10	Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain	0.58	39.0	2.45e-01	70.4%	30.3%
3ckdA02	1.20.58.360	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines	0.57	49.0	4.12e-01	97.2%	58.1%
2v6eA01	1.10.287.3180	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.56	35.0	3.50e-01	94.4%	58.7%
2l35A00	1.10.287.770	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like	0.55	37.0	3.90e-01	95.8%	77.8%
2kbwA01	1.10.437.10	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like	0.55	38.0	2.98e-01	71.8%	49.7%
4mk3A02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.54	38.0	3.30e-01	76.1%	73.0%
7s0rB01	1.20.81.20	Mainly Alpha › Up-down Bundle › Receptor-associated Protein ›	0.52	39.0	3.88e-01	100.0%	76.3%
3q9oA02	3.90.1350.10	Alpha Beta › Alpha-Beta Complex › Exotoxin A, middle domain › Exotoxin A, middle domain	0.52	41.0	3.17e-01	87.3%	83.8%
2js5A00	1.10.287.660	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.51	35.0	3.56e-01	93.0%	70.4%
4ex8A00	3.40.1790.10	Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain	0.51	46.0	2.98e-01	100.0%	90.4%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3479759	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.58	37.0	3.69e-01	97.2%	61.3%
3720382	145.1.1.1 ↗	alpha arrays › F-box domain › F-box domain › F-box domain › F-box	0.52	45.0	3.21e-01	100.0%	32.0%

D4 medium residues 146-186_268-322

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	31.7	1.00e-07	58.3%	11.1%