hypothetical_protein_2

Euk-Vir

Changjiang_tombus-like_virus_4

hypothetical_protein_2__YP_009337230__Changjiang_tombus-like_virus_4__1922818

Identity

89.1 mean pLDDT

Changjiang_tombus-like_virus_4

TaxID: 1922818

View cluster (450 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 335-475

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009336956__Hubei_tombus-like_virus_11__1923257__D331-462

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	46.4	3.50e-12	86.5%	25.1%

D2 medium residues 31-86_127-150

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	33.6	2.60e-08	71.2%	11.1%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2l09A01	1.10.8.550	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B	0.63	31.0	3.80e-01	85.0%	73.1%
4aidA02	1.10.10.400	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain	0.59	35.0	3.53e-01	81.2%	57.3%
1dgnA00	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.55	30.0	2.91e-01	88.7%	44.9%
2iskA01	3.40.109.10	Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase	0.51	44.0	3.42e-01	100.0%	97.4%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4049391	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.63	40.0	3.84e-01	96.2%	54.7%
3697513	109.4.1.356 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans	0.59	40.0	2.84e-01	70.0%	59.6%
4319170	2004.1.1.554 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrB_inter	0.50	41.0	2.81e-01	98.8%	65.9%

D3 medium residues 87-126_193-249

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337432__Changjiang_tombus-like_virus_5__1922819__D23-82_137-181

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	72.7	3.80e-20	58.8%	11.7%
PF00998.29	RdRP_3	46.3	3.70e-12	44.3%	7.8%

D4 medium residues 151-192_250-334

PDB

Domain cluster: rep: hypothetical_protein_1__YP_009337274__Changjiang_tombus-like_virus_14__1922807__D158-196_253-344

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	102.2	4.20e-29	68.5%	17.7%
PF00998.29	RdRP_3	52.8	4.00e-14	33.9%	8.6%