hypothetical_protein_2

Euk-Vir

Sanxia_tombus-like_virus_2

hypothetical_protein_2__YP_009337648__Sanxia_tombus-like_virus_2__1923386

Identity

85.1 mean pLDDT

Sanxia_tombus-like_virus_2

TaxID: 1923386

View cluster (450 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 373-504

PDB

Domain cluster: rep: P95_replicase__YP_009259667__Pelargonium_leaf_curl_virus__35280__D527-559_693-852

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	83.7	1.70e-23	100.0%	27.4%

D2 medium residues 47-74_136-149_238-298

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337432__Changjiang_tombus-like_virus_5__1922819__D23-82_137-181

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	34.2	1.70e-08	65.0%	11.5%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2r7rA05	1.10.357.80	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 ›	0.64	57.0	4.70e-01	96.1%	100.0%
3l1nA02	1.20.1280.140	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.64	39.0	4.26e-01	86.4%	73.6%
6tkvA01	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.63	34.0	4.05e-01	73.8%	79.4%
1i74A02	3.10.310.20	Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain	0.61	31.0	2.99e-01	92.2%	41.2%
6ll8A02	3.10.310.20	Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain	0.59	30.0	2.91e-01	92.2%	40.8%
5gj7A02	2.40.110.10	Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2	0.53	29.0	3.06e-01	98.1%	56.4%
2ix5A02	2.40.110.10	Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2	0.52	29.0	2.87e-01	98.1%	50.5%
4ftfA00	3.30.300.250	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 ›	0.51	29.0	2.85e-01	92.2%	51.4%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4875416	304.48.1.13 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Flavi_NS5	0.79	74.0	4.82e-01	100.0%	61.5%

D3 medium residues 75-135_150-192

PDB

Domain cluster: rep: P95_replicase__YP_009259667__Pelargonium_leaf_curl_virus__35280__D425-467_490-526

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4014047	103.9.1.0 ↗	alpha arrays › RuvA-C › RanGAP2 N-terminal domain › RanGAP2 N-terminal domain	0.55	29.0	2.94e-01	77.9%	46.7%

D4 medium residues 193-237_299-372

PDB

Domain cluster: rep: hypothetical_protein_1__YP_009337274__Changjiang_tombus-like_virus_14__1922807__D158-196_253-344

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	75.6	5.10e-21	63.0%	15.6%
PF00998.29	RdRP_3	46.5	3.30e-12	37.0%	8.8%