←Back to structures
hypothetical_protein_2
Euk-VirHubei_tombus-like_virus_3
hypothetical_protein_2__YP_009337772__Hubei_tombus-like_virus_3__1923277
Identity
- Accession:
- YP_009337772 ↗
- Protein ID:
- hypothetical_protein_2
- Kingdom:
- euk
Quality
88.9
mean pLDDT
Cluster
View cluster (450 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 355-477
Domain cluster:
rep: P95_replicase__YP_009259667__Pelargonium_leaf_curl_virus__35280__D527-559_693-852
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00998.29 best | RdRP_3 | 92.0 | 5.10e-26 | 100.0% | 26.1% |
D2
medium
residues 23-65_124-149
D3
medium
residues 66-87_160-189_216-299
Domain cluster:
rep: hypothetical_protein_2__YP_009342291__Wenzhou_tombus-like_virus_5__1923675__D1-41_111-124_164-201_217-244
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00998.29 best | RdRP_3 | 64.0 | 1.60e-17 | 62.5% | 16.7% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2r7rA05 | 1.10.357.80 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.66 | 54.0 | 4.96e-01 | 86.8% | 93.8% |
| 1neiA00 | 3.30.160.220 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG | 0.62 | 22.0 | 3.28e-01 | 99.3% | 71.7% |
| 5jbrA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 23.0 | 2.74e-01 | 89.7% | 57.0% |
| 2cpmA00 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.51 | 26.0 | 3.05e-01 | 87.5% | 67.0% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4875416 | 304.48.1.13 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Flavi_NS5 | 0.85 | 81.0 | 5.60e-01 | 100.0% | 61.5% |
| 4027687 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.54 | 24.0 | 3.47e-01 | 94.9% | 98.2% |
| 4183868 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.53 | 30.0 | 3.81e-01 | 99.3% | 96.2% |
| 3621798 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.52 | 37.0 | 2.75e-01 | 73.5% | 90.9% |
| 5035383 | 305.2.1.3 ↗ | a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › PF27806 | 0.52 | 28.0 | 3.33e-01 | 100.0% | 77.8% |
| 3998693 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.52 | 37.0 | 2.71e-01 | 73.5% | 90.1% |
| 3585782 | 148.1.3.17 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_lid | 0.52 | 28.0 | 3.27e-01 | 83.1% | 72.0% |
| 3584118 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.52 | 38.0 | 2.72e-01 | 76.5% | 89.9% |
| 3578921 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.51 | 37.0 | 2.73e-01 | 75.7% | 91.5% |
| 3517167 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.50 | 37.0 | 2.70e-01 | 76.5% | 87.1% |
D4
medium
residues 190-215_300-354
Domain cluster:
rep: IMGVR_UViG_3300016457_001358-3300016457-Ga0186713_11630063__D4-82
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00998.29 best | RdRP_3 | 60.2 | 2.30e-16 | 69.1% | 11.3% |