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hypothetical_protein_2
Euk-VirBeihai_sobemo-like_virus_13
hypothetical_protein_2__YP_009337782__Beihai_sobemo-like_virus_13__1922684
Identity
- Accession:
- YP_009337782 ↗
- Protein ID:
- hypothetical_protein_2
- Kingdom:
- euk
Quality
89.1
mean pLDDT
Cluster
View cluster (450 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 301-365
Domain cluster:
rep: hypothetical_protein_2__YP_009330046__Hubei_sobemo-like_virus_16__1923201__D209-277
D2
medium
residues 1-77
Domain cluster:
rep: hypothetical_protein_2__YP_009337145__Beihai_sobemo-like_virus_12__1922683__D1-72
D3
medium
residues 78-126_168-229
Domain cluster:
rep: hypothetical_protein_2__YP_009337432__Changjiang_tombus-like_virus_5__1922819__D23-82_137-181
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02123.22 best | RdRP_4 | 25.9 | 6.70e-06 | 39.6% | 10.1% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kiwA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.53 | 38.0 | 4.23e-01 | 73.9% | 100.0% |
| 3n4eA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.53 | 38.0 | 3.99e-01 | 91.0% | 79.8% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1173784 | 304.48.1.8 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 | 0.85 | 81.0 | 5.38e-01 | 100.0% | 38.2% |
| None | — | 0.83 | 79.0 | 5.29e-01 | 100.0% | 38.0% | |
| 2994348 | 304.48.1.9 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1,CoV_RPol_N | 0.82 | 77.0 | 4.43e-01 | 100.0% | 15.9% |
| 3479114 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.69 | 62.0 | 3.84e-01 | 100.0% | 65.1% |
| 3934288 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.69 | 62.0 | 5.20e-01 | 100.0% | 86.8% |
| 5025050 | 2488.1.1.1 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase | 0.59 | 34.0 | 2.67e-01 | 86.5% | 27.8% |
| 3515268 | 186.2.1.0 ↗ | alpha arrays › lambda integrase-N-like › VEFS domain › VEFS domain | 0.51 | 39.0 | 3.99e-01 | 83.8% | 85.7% |
D4
medium
residues 127-167_230-300