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hypothetical_protein_2
Euk-VirWenzhou_tombus-like_virus_11
hypothetical_protein_2__YP_009342051__Wenzhou_tombus-like_virus_11__1923664
Identity
- Accession:
- YP_009342051 ↗
- Protein ID:
- hypothetical_protein_2
- Kingdom:
- euk
Quality
80.7
mean pLDDT
Cluster
View cluster (450 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 349-476
Domain cluster:
rep: hypothetical_protein_2__YP_009336956__Hubei_tombus-like_virus_11__1923257__D331-462
D2
medium
residues 11-73_131-147
D3
medium
residues 74-130_148-170_216-259
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1bjaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 28.0 | 3.20e-01 | 75.0% | 56.8% |
| 1puoB00 | 1.20.920.50 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.53 | 37.0 | 3.58e-01 | 71.8% | 79.6% |
| 3iwfB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 28.0 | 3.18e-01 | 72.6% | 70.8% |
| 2fu2A00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.51 | 30.0 | 3.66e-01 | 74.2% | 93.6% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2504457 | 7069.1.1.1 ↗ | alpha complex topology › Head domain of SBV glycoprotein Gc › Head domain of SBV glycoprotein Gc › Head domain of SBV glycoprotein Gc › Bunya_G1 | 0.56 | 45.0 | 3.84e-01 | 89.5% | 95.0% |
| 3658999 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.52 | 28.0 | 3.12e-01 | 91.1% | 64.0% |
D4
medium
residues 171-215_260-348
Domain cluster:
rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00998.29 best | RdRP_3 | 66.8 | 2.30e-18 | 66.4% | 18.3% |
| PF02123.22 | RdRP_4 | 23.2 | 4.40e-05 | 64.9% | 9.7% |