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hypothetical_protein_2
Euk-VirJingmen_tombus-like_virus_2
hypothetical_protein_2__YP_009344965__Jingmen_tombus-like_virus_2__1938656
Identity
- Accession:
- YP_009344965 ↗
- Protein ID:
- hypothetical_protein_2
- Kingdom:
- euk
Quality
76.0
mean pLDDT
Cluster
View cluster (450 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 345-471
Domain cluster:
rep: hypothetical_protein_2__YP_009336956__Hubei_tombus-like_virus_11__1923257__D331-462
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4w9rA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.58 | 37.0 | 4.20e-01 | 95.3% | 85.1% |
| 1kxpD03 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.54 | 31.0 | 3.63e-01 | 93.7% | 79.5% |
| 3edvA02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 36.0 | 3.24e-01 | 98.4% | 50.8% |
D2
medium
residues 69-177
Domain cluster:
rep: hypothetical_protein_2__YP_009333161__Hubei_tombus-like_virus_32__1923280__D105-190
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4msxA02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.56 | 36.0 | 2.65e-01 | 80.7% | 23.2% |
| 2ld7B00 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.53 | 31.0 | 3.65e-01 | 75.2% | 84.0% |
| 4ci1B03 | 1.20.58.1480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 26.0 | 3.05e-01 | 77.1% | 69.6% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3250871 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.63 | 47.0 | 4.30e-01 | 79.8% | 70.0% |
| 5029718 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.62 | 47.0 | 3.33e-01 | 80.7% | 26.8% |
| 4937067 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.61 | 46.0 | 3.52e-01 | 80.7% | 34.7% |
| 3473558 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.59 | 52.0 | 4.15e-01 | 100.0% | 53.0% |
| 3165049 | 3218.1.1.0 ↗ | a+b duplicates or obligate multimers › small terminase oligomerization domain › small terminase oligomerization domain › small terminase oligomerization domain | 0.57 | 24.0 | 3.12e-01 | 98.2% | 67.7% |
| None | — | 0.52 | 45.0 | 3.01e-01 | 95.4% | 76.9% | |
| 3408112 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.51 | 35.0 | 2.50e-01 | 78.9% | 23.4% |
| 3578921 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.51 | 39.0 | 2.75e-01 | 82.6% | 76.5% |
D3
medium
residues 178-218_270-344
Domain cluster:
rep: KR816341.1__AKQ06880.1__X__00021__D162-195_238-325
D4
medium
residues 219-269
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zhgA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.62 | 43.0 | 3.32e-01 | 90.2% | 31.4% |
| 4jn7A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.59 | 40.0 | 3.13e-01 | 96.1% | 31.1% |
| 1jphA00 | 3.20.20.210 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.55 | 39.0 | 2.39e-01 | 78.4% | 31.7% |
| 3qvmB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 44.0 | 2.86e-01 | 96.1% | 36.4% |
| 1j93A00 | 3.20.20.210 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.53 | 44.0 | 2.72e-01 | 94.1% | 37.6% |
| 3edpA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 37.0 | 3.36e-01 | 96.1% | 51.3% |
| 4q88A00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.53 | 43.0 | 2.61e-01 | 94.1% | 99.1% |
| 2ganA02 | 6.20.300.10 | Special › Other non-globular › CbiD-like › | 0.50 | 28.0 | 3.11e-01 | 90.2% | 64.1% |
| 1fxkC00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.50 | 41.0 | 3.07e-01 | 94.1% | 94.7% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4003509 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.67 | 57.0 | 4.11e-01 | 100.0% | 34.2% |
| 3597508 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.62 | 43.0 | 3.78e-01 | 90.2% | 46.3% |
| 3651060 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.60 | 48.0 | 3.34e-01 | 94.1% | 26.8% |
| 2754401 | 3343.1.1.2 ↗ | alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal | 0.59 | 48.0 | 2.70e-01 | 96.1% | 11.1% |
| 3734132 | 3542.1.1.3 ↗ | alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B | 0.58 | 50.0 | 3.08e-01 | 100.0% | 17.5% |
| 3519723 | 5059.1.1.5 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › UAA | 0.57 | 45.0 | 2.85e-01 | 94.1% | 75.9% |
| 4961663 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.55 | 44.0 | 2.85e-01 | 96.1% | 29.5% |
| 3401318 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 40.0 | 2.85e-01 | 96.1% | 35.5% |
| 4027126 | 1017.1.1.0 ↗ | a+b two layers › Rrs1 › Rrs1 › Rrs1 | 0.51 | 36.0 | 3.33e-01 | 92.2% | 55.7% |
| 3718200 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.51 | 41.0 | 3.17e-01 | 94.1% | 78.4% |
| 4951472 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.51 | 42.0 | 3.06e-01 | 96.1% | 59.1% |