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hypothetical_protein_2

Euk-Vir

Bracoviriform_demolitoris

hypothetical_protein_2__YP_239366__Bracoviriform_demolitoris__53988

Identity

Accession:
YP_239366 ↗
Protein ID:
hypothetical_protein_2
Kingdom:
euk

Quality

72.5 mean pLDDT

Taxonomy

Polydnaviriformidae› Bracoviriform› Bracoviriform_demolitoris

TaxID: 53988

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-95
PDB
Domain cluster: rep: hypothetical_protein__YP_239371__Bracoviriform_demolitoris__53988__D20-97
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.66 37.0 4.45e-01 77.2% 87.5%
3d89A00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.62 45.0 4.00e-01 78.3% 80.9%
5cw7B00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.61 48.0 4.83e-01 87.0% 100.0%
3gceA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.59 42.0 4.11e-01 75.0% 94.2%
3ek7A01 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.59 43.0 3.18e-01 76.1% 45.7%
3hi2B00 3.30.2310.40 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › 0.58 42.0 4.16e-01 77.2% 86.6%
3ms6A00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.57 40.0 4.04e-01 76.1% 73.3%
4p6zM01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 45.0 4.16e-01 88.0% 86.8%
3aiiA02 2.40.240.100 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › 0.56 32.0 3.77e-01 73.9% 82.8%
3cueC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 45.0 3.97e-01 91.3% 77.6%
4ml0B00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.55 41.0 4.21e-01 80.4% 98.9%
7bwfA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.54 39.0 4.02e-01 76.1% 95.4%
5kvsA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 39.0 3.30e-01 78.3% 95.7%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.53 32.0 3.62e-01 73.9% 79.7%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.53 46.0 3.43e-01 97.8% 84.5%
4l2iB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 41.0 3.12e-01 90.2% 66.5%
3twkA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.52 44.0 3.74e-01 91.3% 64.4%
3rauA00 1.25.40.280 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains 0.52 43.0 2.93e-01 90.2% 94.7%
1e8uA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 42.0 2.80e-01 94.6% 87.9%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4944313 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 53.0 4.68e-01 85.9% 91.1%
3947987 2.1.1.220 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3363 0.66 45.0 4.57e-01 70.7% 92.2%
2966315 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.65 48.0 4.81e-01 79.3% 95.8%
5045233 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 50.0 4.57e-01 87.0% 86.4%
2833984 11.13.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › Leukocidin 0.59 43.0 2.96e-01 76.1% 90.9%
3620870 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 47.0 4.66e-01 89.1% 93.0%
4940748 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.58 43.0 4.46e-01 79.3% 100.0%
4937762 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.57 41.0 4.23e-01 77.2% 97.8%
5080337 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.57 41.0 4.20e-01 76.1% 88.8%
5044967 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.57 41.0 4.18e-01 77.2% 100.0%
5030204 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.56 40.0 4.34e-01 76.1% 100.0%
4220398 304.48.1.11 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.56 38.0 3.17e-01 70.7% 98.8%
5042309 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.55 46.0 4.64e-01 90.2% 93.3%
3819668 375.8.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.55 26.0 3.40e-01 92.4% 88.6%
3936760 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.52 39.0 3.94e-01 77.2% 84.4%
3612107 375.8.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.51 26.0 3.09e-01 71.7% 71.7%
3594518 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.51 40.0 2.94e-01 87.0% 64.5%
5046981 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.50 35.0 2.82e-01 91.3% 34.4%