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hypothetical_protein_3

Euk-Vir

Hubei_sobemo-like_virus_13

hypothetical_protein_3__YP_009330098__Hubei_sobemo-like_virus_13__1923198

Identity

Accession:: YP_009330098 ↗
Protein ID:: hypothetical_protein_3
Kingdom:: euk

Quality

91.7 mean pLDDT

Taxonomy

Hubei_sobemo-like_virus_13

TaxID: 1923198

Cluster

View cluster (85 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-82

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5awwY00	1.10.3370.10	Mainly Alpha › Orthogonal Bundle › Preprotein translocase SecY subunit › SecY subunit domain	0.55	38.0	2.44e-01	75.0%	43.2%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
None	—		0.72	55.0	3.46e-01	100.0%	16.1%
1173784	304.48.1.8 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1	0.71	54.0	3.43e-01	100.0%	16.0%
3278560	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.56	38.0	3.21e-01	70.8%	68.3%
3934203	5001.1.1.5 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3	0.51	39.0	2.50e-01	80.6%	86.0%

D2 high residues 287-351

PDB

Domain cluster: representative

CATH (16)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3cqcB01	1.20.58.1380	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.74	55.0	4.95e-01	80.0%	67.8%
2d2sA01	1.20.58.1210	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain	0.72	60.0	4.91e-01	90.8%	76.7%
2v6yA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.70	52.0	4.97e-01	78.5%	88.0%
1yxrA01	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.68	51.0	4.89e-01	80.0%	90.5%
3bjdA01	1.10.1240.20	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain	0.68	51.0	4.73e-01	84.6%	88.6%
3l9tA02	1.25.40.290	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat domains	0.66	55.0	4.61e-01	95.4%	64.4%
1o0sA02	1.20.1370.30	Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain ›	0.66	45.0	3.89e-01	72.3%	65.7%
2xgsB01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.64	49.0	4.77e-01	86.2%	78.1%
3s63A00	1.10.225.10	Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like	0.63	45.0	4.09e-01	75.4%	72.7%
4g1tA02	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.61	45.0	4.60e-01	81.5%	93.4%
3dewA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.60	50.0	4.05e-01	100.0%	74.3%
2f07B00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.60	48.0	3.48e-01	90.8%	50.5%
2ogwA01	3.40.50.1980	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain	0.59	42.0	3.31e-01	76.9%	92.6%
1elwA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.56	46.0	3.97e-01	98.5%	82.9%
7v8uA01	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.56	48.0	3.30e-01	100.0%	82.0%
4m7oA01	3.40.50.1980	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain	0.56	40.0	3.30e-01	76.9%	98.4%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3596822	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.72	52.0	4.29e-01	75.4%	79.1%
3732480	109.4.1.681 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2	0.71	63.0	3.92e-01	100.0%	71.8%
3960578	633.16.1.0 ↗	alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like	0.70	49.0	4.22e-01	76.9%	45.7%
4004000	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.69	56.0	4.64e-01	92.3%	65.0%
3965857	109.7.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E	0.68	56.0	5.03e-01	95.4%	68.1%
3347410	109.4.1.189 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2	0.64	52.0	4.24e-01	95.4%	51.9%
4945271	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.63	50.0	3.52e-01	92.3%	45.0%
4974476	2500.1.1.0 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel	0.61	52.0	3.05e-01	100.0%	17.8%
3973020	1197.1.1.0 ↗	alpha bundles › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY	0.61	43.0	3.17e-01	75.4%	33.3%
3751351	3796.1.1.0 ↗	alpha arrays › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain	0.57	41.0	4.16e-01	76.9%	80.0%
3914757	592.1.1.7 ↗	alpha arrays › PWI domain-like › PWI domain › PWI domain › PF26091	0.56	39.0	3.86e-01	73.8%	74.3%

D3 medium residues 99-137_206-286

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181

D4 medium residues 138-205

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009342451__Wuhan_house_centipede_virus_4__1923708__D36-106