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hypothetical_protein_3

Euk-Vir

Hubei_toti-like_virus_17

hypothetical_protein_3__YP_009336917__Hubei_toti-like_virus_17__1923305

Identity

Accession:
YP_009336917 ↗
Protein ID:
hypothetical_protein_3
Kingdom:
euk

Quality

69.1 mean pLDDT

Taxonomy

TaxID: 1923305

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 93-140_272-388
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xmjA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 22.0 3.47e-01 70.9% 74.6%
1in0A01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 21.0 3.17e-01 70.9% 67.1%
1rzmA01 3.30.70.1140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1 0.63 21.0 2.98e-01 70.9% 58.7%
1lfwA03 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 23.0 3.22e-01 70.9% 68.2%
2ebbA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.60 24.0 3.04e-01 70.9% 59.4%
1a8rA01 1.10.286.10 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain 0.57 24.0 3.21e-01 95.2% 70.6%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 27.0 3.15e-01 80.6% 69.6%
1x60A01 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.52 19.0 2.81e-01 70.9% 73.6%
5hs7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 24.0 3.03e-01 79.4% 71.4%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4875416 304.48.1.13 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Flavi_NS5 0.83 79.0 5.81e-01 100.0% 77.0%
5367 304.48.1.8 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.80 76.0 5.63e-01 100.0% 82.5%
1789314 304.48.1.8 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.78 74.0 5.46e-01 100.0% 72.8%
217141 304.48.1.15 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3 0.78 74.0 5.60e-01 100.0% 80.7%
223786 304.48.1.16 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_4 0.77 71.0 5.53e-01 97.0% 93.5%
1173784 304.48.1.8 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.76 71.0 5.39e-01 100.0% 81.0%
5035783 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.75 29.0 4.08e-01 70.9% 72.5%
None 0.75 70.0 5.30e-01 100.0% 81.1%
5056043 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.73 24.0 3.74e-01 70.9% 72.3%
5076264 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.73 23.0 3.67e-01 70.9% 70.8%
5017421 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.69 24.0 3.68e-01 70.9% 75.4%
3615476 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.66 60.0 4.73e-01 97.0% 90.2%
3193439 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.66 60.0 4.87e-01 97.6% 80.0%
3789227 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.65 56.0 4.47e-01 90.3% 94.5%
3350520 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.63 59.0 4.39e-01 100.0% 75.9%
3669721 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.63 59.0 4.74e-01 100.0% 83.3%
3465998 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.62 59.0 4.77e-01 100.0% 70.0%
3708776 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.61 56.0 4.39e-01 97.0% 73.8%
4365193 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.61 57.0 4.58e-01 100.0% 73.2%
3204756 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.60 56.0 4.37e-01 100.0% 73.2%
4793418 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.58 54.0 4.51e-01 99.4% 96.4%
3916504 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.57 47.0 4.03e-01 96.4% 56.5%
3945039 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.57 52.0 4.11e-01 98.8% 54.5%
3984781 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.57 41.0 4.19e-01 78.8% 76.9%
4391867 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.52 40.0 2.95e-01 80.6% 40.2%
3679386 4967.1.1.0 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.51 45.0 3.55e-01 97.0% 48.0%
4946823 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 22.0 3.21e-01 87.9% 89.3%
3718570 101.1.10.9 alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.51 26.0 3.00e-01 89.1% 64.0%
4040332 101.1.9.20 alpha arrays › HTH › HTH › Putative DNA-binding domain › PhetRS_B1 0.50 24.0 3.32e-01 84.8% 91.3%
4070164 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.50 44.0 3.43e-01 95.2% 49.4%
D2 medium residues 141-250
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bqhA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.53 40.0 2.63e-01 80.9% 57.4%
1neiA00 3.30.160.220 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG 0.52 24.0 3.05e-01 88.2% 75.0%
4je3B00 3.10.20.720 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.50 26.0 3.03e-01 95.5% 68.8%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4071235 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.66 60.0 3.85e-01 100.0% 25.9%
4516798 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.66 60.0 3.93e-01 100.0% 28.8%
3792091 304.48.1.25 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RRM_4 0.60 53.0 3.74e-01 97.3% 71.6%
3176771 7516.1.1.7 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › UDPGP 0.51 37.0 2.58e-01 74.5% 34.7%
5040050 3326.1.1.1 alpha arrays › DNA-binding domain in UvrA › DNA-binding domain in UvrA › DNA-binding domain in UvrA › UvrA_DNA-bind 0.50 42.0 4.15e-01 92.7% 90.4%
D3 medium residues 435-511
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 45.0 4.55e-01 74.0% 69.2%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.66 46.0 4.32e-01 74.0% 72.7%
1mukA02 3.90.1850.10 Alpha Beta › Alpha-Beta Complex › RNA-directed RNA polymerase lambda-3 › RNA-directed RNA polymerase lambda-3 0.66 59.0 3.55e-01 100.0% 16.1%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.64 45.0 4.48e-01 72.7% 73.4%
1irxA05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.63 46.0 4.40e-01 79.2% 67.7%
3jamD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.63 48.0 3.98e-01 81.8% 69.9%
2whnA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.62 46.0 4.13e-01 79.2% 71.8%
2vmaA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.61 44.0 3.85e-01 77.9% 62.3%
2cvzA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.60 44.0 3.78e-01 80.5% 90.9%
3ugjA02 1.10.8.750 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Phosphoribosylformylglycinamidine synthase, linker domain 0.60 34.0 3.75e-01 88.3% 69.4%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.60 47.0 3.98e-01 87.0% 68.4%
3bf5A01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.59 41.0 2.90e-01 71.4% 89.5%
1mhyG02 1.20.1280.30 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 0.58 39.0 4.03e-01 81.8% 74.0%
4g1tA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 39.0 4.31e-01 94.8% 90.2%
2zttA00 6.10.140.720 Special › Helix non-globular › Helix Hairpins › 0.57 39.0 3.98e-01 71.4% 80.8%
1q0gA00 1.20.120.400 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nickel-containing superoxide dismutase 0.56 42.0 3.67e-01 80.5% 68.4%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.54 39.0 3.27e-01 79.2% 83.8%
4i5lB01 1.10.238.230 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.53 38.0 3.51e-01 75.3% 68.0%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.52 39.0 3.82e-01 80.5% 77.6%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.52 45.0 3.63e-01 98.7% 82.7%
1dlcA01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.51 44.0 3.24e-01 100.0% 51.5%
5xdcB01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.50 41.0 3.74e-01 94.8% 99.1%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3944885 101.1.1.355 alpha arrays › HTH › HTH › Three-helical HTH › DUF2857 0.80 50.0 5.39e-01 77.9% 75.4%
3266463 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 49.0 5.55e-01 71.4% 92.7%
4050022 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.70 47.0 5.36e-01 79.2% 98.2%
3611276 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.69 48.0 4.36e-01 71.4% 59.0%
3398490 101.1.1.112 alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.69 47.0 5.03e-01 72.7% 84.6%
4994947 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 53.0 5.28e-01 84.4% 80.0%
4395930 101.8.1.4 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f 0.69 51.0 3.55e-01 79.2% 25.6%
4185536 101.8.1.4 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f 0.68 50.0 3.07e-01 79.2% 12.4%
3643885 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 50.0 5.18e-01 79.2% 88.6%
3629963 330.1.1.6 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Staufen_C 0.66 47.0 4.30e-01 74.0% 99.0%
4955389 101.1.1.542 alpha arrays › HTH › HTH › Three-helical HTH › DUF790 0.63 43.0 4.89e-01 72.7% 98.2%
4986733 101.8.1.4 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f 0.60 43.0 2.75e-01 77.9% 14.5%
3500273 109.3.1.163 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_4, Ank_5 0.59 50.0 3.33e-01 98.7% 35.8%
3668383 170.1.1.0 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.58 49.0 4.47e-01 93.5% 80.0%
3485826 101.1.1.46 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_2 0.58 41.0 4.10e-01 77.9% 71.2%
4341970 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.56 46.0 3.13e-01 93.5% 52.5%
3435472 376.1.4.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog 0.55 33.0 3.59e-01 88.3% 69.2%
3714425 109.4.1.210 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 0.55 43.0 3.78e-01 98.7% 57.4%
4981097 101.8.1.0 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases 0.54 37.0 2.86e-01 71.4% 33.9%
3774120 4320.1.1.1 alpha superhelices › Taf5 N-terminal domain-like › Taf5 N-terminal domain-like › Taf5 N-terminal domain-like › TFIID_NTD2 0.53 43.0 3.21e-01 94.8% 41.3%
3667902 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.52 36.0 3.79e-01 90.9% 81.4%
3479253 616.1.1.0 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.52 44.0 3.38e-01 94.8% 68.1%
3484709 109.4.1.1140 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_PEP5_VPS11 0.51 44.0 3.20e-01 96.1% 36.9%
3724654 206.1.1.82 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF7580 0.50 42.0 2.97e-01 98.7% 75.4%
D4 medium residues 675-726
PDB