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hypothetical_protein_3

Euk-Vir

Wenling_tombus-like_virus_3

hypothetical_protein_3__YP_009337225__Wenling_tombus-like_virus_3__1923545

Identity

Accession:
YP_009337225 ↗
Protein ID:
hypothetical_protein_3
Kingdom:
euk

Quality

70.8 mean pLDDT

Taxonomy

Wenling_tombus-like_virus_3

TaxID: 1923545

Cluster

View cluster (25 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-33_86-123_223-239
PDB
Domain cluster: rep: hypothetical_protein_1__YP_009336894__Beihai_tombus-like_virus_10__1922713__D560-591_654-678_782-796
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5qivA01 3.30.200.60 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Peptidase C65 Otubain, subdomain 1 0.51 36.0 3.78e-01 90.9% 81.5%
4bopB00 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 44.0 3.74e-01 98.9% 100.0%
6k9nA01 3.30.200.60 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Peptidase C65 Otubain, subdomain 1 0.50 38.0 3.84e-01 100.0% 80.0%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3753267 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.60 53.0 3.41e-01 100.0% 60.9%
D2 medium residues 34-85_124-155_188-222_240-258
PDB
Domain cluster: rep: hypothetical_protein_2__YP_009345057__Xinzhou_nematode_virus_7__1923775__D105-168_195-237_259-336
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ldjA04 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.54 31.0 3.38e-01 83.3% 65.2%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.52 32.0 3.67e-01 79.7% 82.5%
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 31.0 3.55e-01 81.9% 84.5%
D3 medium residues 156-187_259-352
PDB
Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gx5A03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.90 65.0 6.67e-01 73.8% 97.5%
1s48A04 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.87 64.0 6.89e-01 76.2% 98.2%
4i0wA00 3.30.70.2980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 36.0 4.20e-01 71.4% 72.8%
4clfA02 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.60 42.0 3.75e-01 73.0% 91.3%
1whvA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 37.0 4.10e-01 71.4% 78.0%
1oaoC03 3.30.1650.10 Alpha Beta › 2-Layer Sandwich › Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3 › Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3 0.59 41.0 3.71e-01 72.2% 80.1%
4fxdA05 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.58 46.0 4.76e-01 82.5% 94.9%
4limA00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.57 45.0 3.27e-01 85.7% 80.1%
2cfxA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.57 39.0 4.45e-01 71.4% 96.7%
2efpA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.57 39.0 4.37e-01 71.4% 92.9%
2hg4D03 3.40.366.10 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 0.56 45.0 3.40e-01 84.9% 98.7%
3lduA01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.56 40.0 3.53e-01 73.0% 60.6%
3ldgA01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.52 37.0 3.26e-01 73.8% 55.7%
7veeA02 3.40.366.10 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 0.52 45.0 3.39e-01 96.8% 70.5%
2vz8A03 3.40.366.10 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 0.51 46.0 3.39e-01 97.6% 71.6%
3u0oA02 3.90.650.10 Alpha Beta › Alpha-Beta Complex › Phosphoribosyl-aminoimidazole Synthetase; Chain A, domain 2 › PurM-like C-terminal domain 0.51 41.0 3.62e-01 84.9% 100.0%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3483524 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.74 57.0 4.27e-01 81.0% 60.0%
1837331 304.7.1.7 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › CspB_prodomain 0.67 36.0 4.20e-01 71.4% 72.8%
4936417 304.26.1.3 ↗ a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › DUF2102 0.61 42.0 4.52e-01 70.6% 84.8%
5011764 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.59 36.0 4.34e-01 70.6% 95.0%
3565650 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.56 39.0 4.50e-01 73.0% 98.9%
3958402 304.11.1.1 ↗ a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Acyl_transf_1 0.51 35.0 3.32e-01 70.6% 99.3%
D4 medium residues 353-467
PDB