hypothetical_protein_3

Euk-Vir

Wenzhou_tombus-like_virus_12

hypothetical_protein_3__YP_009342265__Wenzhou_tombus-like_virus_12__1923665

Identity

85.1 mean pLDDT

Wenzhou_tombus-like_virus_12

TaxID: 1923665

View cluster (32 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 314-436

PDB

Domain cluster: rep: P95_replicase__YP_009259667__Pelargonium_leaf_curl_virus__35280__D527-559_693-852

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	35.2	9.00e-09	100.0%	26.3%

D2 medium residues 13-36_114-153_201-253

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2c4kA01	3.40.50.2020	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.58	31.0	2.78e-01	70.9%	35.3%
1whuA00	1.10.10.400	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain	0.55	37.0	3.92e-01	94.9%	76.9%
2kiwA01	1.10.150.130	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain	0.55	32.0	3.62e-01	76.1%	76.7%
1hbxA01	3.40.1810.10	Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box	0.55	24.0	2.93e-01	71.8%	62.0%
2lh9A00	3.30.420.610	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like	0.50	31.0	3.59e-01	70.1%	91.0%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4429233	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.58	34.0	3.87e-01	91.5%	77.6%
4140359	190.1.1.7 ↗	alpha arrays › HMG-box-like › HMG-box › HMG-box › MATalpha_HMGbox	0.51	36.0	3.31e-01	72.6%	60.0%
4432407	101.1.2.137 ↗	alpha arrays › HTH › HTH › winged helix domain › OST-HTH	0.51	31.0	3.46e-01	70.1%	78.9%

D3 medium residues 37-113

PDB

Domain cluster: representative

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3316895	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.53	38.0	2.81e-01	77.9%	79.6%
3727209	109.4.1.509 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRP12_HEAT	0.53	36.0	2.14e-01	71.4%	83.5%
3560248	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.51	37.0	2.28e-01	79.2%	36.8%

D4 medium residues 154-200_254-312

PDB

Domain cluster: rep: hypothetical_protein_1__YP_009337274__Changjiang_tombus-like_virus_14__1922807__D158-196_253-344

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	27.4	2.10e-06	43.4%	8.2%