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hypothetical_protein_A190_gp014

Euk-Vir

European_catfish_virus

hypothetical_protein_A190_gp014__YP_006347593__European_catfish_virus__84739

Identity

Accession:
YP_006347593 ↗
Protein ID:
hypothetical_protein_A190_gp014
Kingdom:
euk

Quality

68.5 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Iridoviridae› Ranavirus› European_catfish_virus

TaxID: 84739

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 159-273
PDB
Domain cluster: rep: hypothetical_protein_SERV_ORF3__YP_009259479__Short-finned_eel_ranavirus__638660__D160-261
D2 medium residues 62-116
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tj7A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.56 43.0 3.47e-01 81.8% 42.9%
1kvdA00 4.10.420.10 Few Secondary Structures › Irregular › Smk Toxin, alpha chain › Smk Toxin, alpha chain 0.51 39.0 3.81e-01 83.6% 84.1%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3380823 109.4.1.1146 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_PUB 0.66 48.0 2.79e-01 85.5% 9.4%
3978820 4952.1.1.1 ↗ alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › Lyase_1 0.63 46.0 3.70e-01 76.4% 70.5%
3483247 195.1.1.0 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like 0.55 41.0 3.03e-01 83.6% 63.1%
D3 medium residues 117-155_277-291
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1o5wA02 3.90.660.10 Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › 0.62 47.0 3.02e-01 83.3% 60.9%
1ii7B02 3.30.110.80 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › DNA double-strand break repair nuclease 0.61 39.0 3.41e-01 81.5% 42.2%
3db5A00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.60 37.0 2.85e-01 72.2% 27.4%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.57 42.0 3.85e-01 79.6% 78.1%
2kanA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 40.0 3.67e-01 74.1% 98.6%
1o5wB02 3.90.660.10 Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › 0.57 43.0 3.06e-01 83.3% 40.2%
4kdiD00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 41.0 3.69e-01 77.8% 100.0%
3hn2B01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 45.0 3.28e-01 96.3% 80.0%
1euvB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 40.0 3.61e-01 79.6% 93.7%
3f8xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 45.0 3.47e-01 94.4% 71.2%
3hi0A02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.55 45.0 3.15e-01 92.6% 73.8%
1g5aA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 40.0 3.73e-01 87.0% 59.5%
3c4aA02 3.30.9.20 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › 0.54 41.0 3.05e-01 85.2% 50.0%
2vkpB00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.53 36.0 2.94e-01 72.2% 45.9%
1v86A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 38.0 3.23e-01 77.8% 76.8%
4epsA02 2.60.40.3570 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 36.0 2.76e-01 72.2% 82.4%
5tkwA02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.51 36.0 3.46e-01 77.8% 75.8%
3f7sA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 41.0 3.16e-01 98.1% 76.1%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2605239 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.61 48.0 3.75e-01 87.0% 80.8%
3707959 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.61 42.0 3.57e-01 70.4% 90.6%
3935790 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.60 44.0 3.51e-01 77.8% 47.3%
3285647 2003.1.2.120 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_oxidored, NAD_binding_8 0.60 51.0 2.99e-01 96.3% 42.8%
3605761 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.59 42.0 3.37e-01 75.9% 87.3%
3307679 243.1.1.2 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.59 49.0 3.72e-01 96.3% 75.0%
3705388 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 41.0 3.44e-01 75.9% 87.9%
4015021 221.1.3.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Sulfite oxidase, middle catalytic domain 0.57 44.0 2.79e-01 81.5% 60.0%
4940825 229.1.1.1 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 0.57 38.0 3.30e-01 70.4% 92.9%
3413243 331.18.1.0 ↗ a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc 0.57 46.0 3.48e-01 100.0% 82.3%
3279688 4228.1.1.0 ↗ a+b complex topology › L,D-transpeptidase pre-catalytic domain-like › L,D-transpeptidase pre-catalytic domain-like › L,D-transpeptidase pre-catalytic domain-like 0.56 41.0 3.63e-01 81.5% 92.9%
3579123 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.55 39.0 2.42e-01 75.9% 16.9%
4940735 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.55 45.0 2.76e-01 92.6% 37.1%
4602539 3174.2.1.1 ↗ beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.55 40.0 3.86e-01 77.8% 90.5%
3794803 221.1.1.153 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_PRKD1_N 0.55 40.0 3.41e-01 81.5% 91.6%
4884125 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.54 38.0 3.68e-01 74.1% 81.0%
4304652 2.2.1.0 ↗ beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins 0.54 41.0 3.83e-01 85.2% 90.0%
3619409 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.54 37.0 2.93e-01 72.2% 42.6%
5077568 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.54 38.0 3.64e-01 79.6% 91.4%
166780 70.3.1.5 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › PRDM2_PR 0.53 36.0 2.59e-01 70.4% 25.8%
5033227 2003.1.2.300 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GGR_cat 0.53 45.0 2.79e-01 92.6% 86.1%
5034127 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.53 36.0 2.20e-01 72.2% 39.0%
4133267 4076.3.1.3 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › SLD5_C 0.52 33.0 3.31e-01 81.5% 61.8%