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hypothetical_protein_A3303_gp007

Euk-Vir

Brazilian_marseillevirus

hypothetical_protein_A3303_gp007__YP_009238512__Brazilian_marseillevirus__1813599

Identity

Accession:
YP_009238512 ↗
Protein ID:
hypothetical_protein_A3303_gp007
Kingdom:
euk

Quality

59.7 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Brazilian_marseillevirus

TaxID: 1813599

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-77
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4npsA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 32.0 3.65e-01 93.5% 63.8%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 43.0 3.68e-01 75.3% 82.3%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.59 35.0 3.46e-01 77.9% 54.9%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.58 32.0 3.66e-01 94.8% 72.7%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 30.0 3.67e-01 90.9% 80.9%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 28.0 3.02e-01 89.6% 50.0%
1b3qA04 2.40.50.180 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 0.57 33.0 3.54e-01 98.7% 66.7%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 29.0 3.24e-01 93.5% 58.3%
3sfvB02 6.10.140.2010 Special › Helix non-globular › Helix Hairpins › 0.56 45.0 3.41e-01 89.6% 41.5%
1ni5A02 1.20.59.20 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › 0.54 33.0 3.26e-01 85.7% 54.7%
1br2A04 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 44.0 3.51e-01 100.0% 42.5%
2gtiA01 3.30.160.820 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Nsp15 N-terminal domain-like 0.54 36.0 3.90e-01 96.1% 84.4%
2fmlA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.54 42.0 3.48e-01 92.2% 80.5%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 3.79e-01 84.4% 88.2%
7lgjA01 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.53 39.0 2.88e-01 80.5% 100.0%
6o1wA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 43.0 3.10e-01 98.7% 96.5%
6ui4A02 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 43.0 3.55e-01 100.0% 51.0%
3w6kC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 40.0 3.88e-01 100.0% 79.3%
3u9sE04 3.30.700.40 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.50 44.0 3.79e-01 100.0% 87.2%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3379402 109.4.1.1291 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.65 41.0 2.41e-01 100.0% 7.9%
3386843 4263.2.1.0 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.64 33.0 3.70e-01 93.5% 63.3%
3988565 4.16.1.0 ↗ beta barrels › SH3 › PhtA domain-like › PhtA domain-like 0.62 33.0 4.07e-01 92.2% 86.7%
5010030 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.62 29.0 3.84e-01 77.9% 85.0%
3275056 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.60 42.0 3.08e-01 100.0% 27.5%
3349197 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.59 41.0 2.90e-01 100.0% 22.9%
3699491 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 40.0 2.56e-01 70.1% 23.6%
5012802 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 39.0 3.72e-01 75.3% 57.9%
4990499 2003.1.5.32 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Cons_hypoth95 0.57 39.0 2.73e-01 100.0% 20.0%
4971042 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.57 39.0 3.83e-01 97.4% 64.7%
4929483 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.57 40.0 3.52e-01 96.1% 48.3%
3301558 109.4.1.1269 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif 0.57 37.0 2.33e-01 100.0% 11.6%
4128954 2.1.1.14 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.57 29.0 3.03e-01 84.4% 52.9%
3360215 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.56 35.0 2.69e-01 98.7% 24.6%
4976343 810.1.1.2 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.56 37.0 3.33e-01 70.1% 93.8%
2755458 316.1.1.26 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › SMODS 0.55 46.0 3.37e-01 92.2% 47.8%
4975819 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 43.0 3.17e-01 87.0% 96.0%
4937815 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 37.0 3.70e-01 70.1% 100.0%
4994522 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.55 41.0 3.26e-01 83.1% 38.7%
4201703 3860.1.1.131 ↗ alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › Myosin_head 0.55 48.0 2.96e-01 100.0% 33.9%
5072765 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.53 42.0 2.96e-01 88.3% 53.1%
4995072 101.41.1.0 ↗ alpha arrays › HTH › MRB1590 C-terminal domain › MRB1590 C-terminal domain 0.53 35.0 3.27e-01 84.4% 54.0%
4992892 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.53 44.0 3.04e-01 93.5% 52.2%
4954645 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.52 36.0 3.14e-01 98.7% 45.0%
3271085 2004.1.1.17 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.52 46.0 2.66e-01 100.0% 10.3%
4931543 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.52 43.0 3.03e-01 92.2% 50.2%
4992898 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.52 43.0 2.96e-01 93.5% 47.2%
4938012 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.52 36.0 2.35e-01 72.7% 93.7%
5042618 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.52 34.0 3.65e-01 97.4% 81.5%
5036525 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.51 44.0 3.17e-01 97.4% 52.0%
4939248 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.51 44.0 3.00e-01 97.4% 48.3%
4018231 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.51 39.0 2.88e-01 81.8% 81.5%
3214149 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.51 27.0 2.93e-01 89.6% 53.8%
4938468 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.51 44.0 3.06e-01 97.4% 52.5%
3634974 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 45.0 3.02e-01 100.0% 38.1%
4363149 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 44.0 2.50e-01 100.0% 8.4%
4454324 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.51 41.0 3.78e-01 100.0% 69.0%
5062211 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.50 43.0 3.27e-01 97.4% 71.5%
4014848 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.50 42.0 3.26e-01 98.7% 77.9%
D2 medium residues 87-162
PDB