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hypothetical_protein_A3303_gp029

Euk-Vir

Brazilian_marseillevirus

hypothetical_protein_A3303_gp029__YP_009238534__Brazilian_marseillevirus__1813599

Identity

Accession:
YP_009238534 ↗
Protein ID:
hypothetical_protein_A3303_gp029
Kingdom:
euk

Quality

70.9 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Brazilian_marseillevirus

TaxID: 1813599

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 62-116
PDB
Domain cluster: rep: hypothetical_protein_ml_177__YP_009165143__Mollivirus_sibericum_Viruses.__X__D52-99
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m7nA03 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.59 35.0 4.14e-01 81.8% 97.1%
7sz2A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.58 45.0 3.95e-01 89.1% 83.7%
1d0qA00 3.90.580.10 Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain 0.58 45.0 3.79e-01 89.1% 73.5%
3cihA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 49.0 3.77e-01 98.2% 46.3%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 47.0 3.62e-01 100.0% 65.0%
2idaA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 46.0 3.97e-01 92.7% 90.9%
1kcgC00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.55 43.0 3.25e-01 96.4% 84.1%
4u1eI00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 42.0 2.71e-01 90.9% 56.1%
4dnaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 45.0 3.07e-01 96.4% 79.4%
2aklA01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.54 36.0 3.99e-01 85.5% 88.4%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.54 40.0 3.17e-01 90.9% 84.0%
1m2vB03 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.53 38.0 3.69e-01 90.9% 67.7%
4hkhA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.53 44.0 3.22e-01 92.7% 77.2%
1ej6A04 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 47.0 3.07e-01 100.0% 70.4%
1qmeA01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.52 39.0 3.44e-01 89.1% 72.9%
1fjrA02 2.170.180.11 Mainly Beta › Beta Complex › Methuselah ectodomain, domain 2 › Methuselah ectodomain, domain 2 0.52 43.0 3.33e-01 92.7% 76.0%
1kqfB01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 39.0 3.37e-01 83.6% 68.9%
2nutA02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.51 39.0 3.84e-01 94.5% 75.4%
2xzm901 6.20.50.180 Special › Other non-globular › N-terminal domain of TfIIb › 0.51 35.0 3.26e-01 83.6% 55.6%
2vpjA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.51 38.0 2.62e-01 94.5% 73.0%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3245636 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.68 38.0 3.87e-01 78.2% 52.7%
3393358 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 43.0 3.66e-01 72.7% 68.4%
3451495 5.3.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.63 43.0 3.33e-01 70.9% 89.6%
3948035 2.1.1.96 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Gp138_N 0.62 36.0 2.44e-01 78.2% 16.0%
4975267 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 37.0 4.15e-01 80.0% 82.5%
5026767 3006.1.1.1 ↗ a+b two layers › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › Lsm_C 0.59 41.0 3.83e-01 83.6% 58.6%
3331569 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.57 39.0 4.00e-01 80.0% 72.7%
3333753 375.1.1.42 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rep_fac-A_C 0.56 33.0 4.02e-01 90.9% 94.3%
1736408 5.1.3.134 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR, BNR_2 0.54 45.0 2.71e-01 100.0% 35.2%
350466 375.1.1.30 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.54 40.0 2.85e-01 94.5% 25.4%
5015586 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.54 35.0 3.63e-01 83.6% 72.0%
3995904 375.1.1.30 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.54 39.0 3.35e-01 92.7% 47.3%
3742502 375.1.1.30 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.53 39.0 3.38e-01 92.7% 48.9%
4278066 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.53 36.0 3.21e-01 90.9% 49.4%
3808136 375.1.1.30 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.53 39.0 3.42e-01 92.7% 48.9%
3365579 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.53 38.0 3.19e-01 76.4% 72.6%
3708692 375.1.1.30 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.53 39.0 2.77e-01 92.7% 25.1%
1210727 375.1.1.30 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.53 38.0 3.33e-01 92.7% 50.0%
3784092 375.1.1.30 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.53 37.0 3.40e-01 92.7% 56.0%
3237443 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 42.0 2.48e-01 87.3% 22.5%
3669336 376.1.2.12 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › zf-RING_2 0.52 40.0 3.50e-01 85.5% 82.4%
3601077 375.1.1.30 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.52 38.0 3.58e-01 94.5% 62.9%
4003584 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.51 37.0 3.48e-01 80.0% 80.0%
3878170 5.1.4.549 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF28327 0.51 40.0 2.53e-01 87.3% 37.8%
3599588 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.51 43.0 3.51e-01 100.0% 73.6%
4374415 375.1.1.30 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.50 37.0 3.43e-01 94.5% 60.0%