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hypothetical_protein_A3303_gp042

Euk-Vir

Brazilian_marseillevirus

hypothetical_protein_A3303_gp042__YP_009238547__Brazilian_marseillevirus__1813599

Identity

Accession:
YP_009238547 ↗
Protein ID:
hypothetical_protein_A3303_gp042
Kingdom:
euk

Quality

67.2 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Brazilian_marseillevirus

TaxID: 1813599

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 38-122
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18905.6 best DUF5661 112.3 1.50e-32 77.6% 98.5%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3w4sA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.63 46.0 3.28e-01 78.8% 90.8%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.63 33.0 3.03e-01 98.8% 37.5%
3lfuA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.62 36.0 3.94e-01 71.8% 70.0%
4p17A02 1.10.8.270 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains 0.59 44.0 4.16e-01 82.4% 65.5%
5ysqB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.59 44.0 3.16e-01 81.2% 95.7%
4m70B00 1.10.246.200 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain 0.58 40.0 4.00e-01 72.9% 89.0%
3gxvB00 1.10.860.10 Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A 0.58 45.0 4.04e-01 84.7% 84.6%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 3.43e-01 71.8% 89.1%
1eu8A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 40.0 3.04e-01 76.5% 76.5%
3tdgA02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 42.0 3.71e-01 85.9% 80.3%
2ivxB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.52 40.0 3.44e-01 82.4% 98.6%
1zvzA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.52 32.0 2.84e-01 100.0% 41.9%
1k04A02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.52 38.0 3.60e-01 78.8% 92.3%
6fhoA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 45.0 3.47e-01 100.0% 77.3%
1grjA01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.50 27.0 2.89e-01 82.4% 59.5%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4198250 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.67 47.0 5.14e-01 72.9% 94.3%
3273235 148.1.3.40 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ORC5_lid 0.65 51.0 4.23e-01 82.4% 69.7%
3571483 60.1.1.16 ↗ beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain › MTBP_C 0.65 47.0 4.88e-01 75.3% 97.5%
5012580 101.1.10.76 ↗ alpha arrays › HTH › HTH › Cyclin-like › HTH_23 0.60 41.0 3.78e-01 71.8% 98.3%
4939361 3896.1.2.0 ↗ alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-archaeol synthase 0.60 51.0 4.37e-01 100.0% 66.0%
3935199 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.58 44.0 4.29e-01 83.5% 94.7%
4020908 180.1.1.0 ↗ alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase 0.57 44.0 3.60e-01 82.4% 96.9%
3685011 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.57 51.0 3.55e-01 100.0% 82.1%
4945175 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.57 43.0 3.35e-01 83.5% 86.8%
3733620 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.57 50.0 3.53e-01 100.0% 81.1%
5044979 5076.2.1.0 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ 0.56 49.0 3.44e-01 100.0% 62.4%
5000788 5060.1.1.0 ↗ alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C 0.55 39.0 3.64e-01 100.0% 59.0%
5013151 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.55 47.0 3.07e-01 98.8% 61.6%
4934804 3651.1.1.1 ↗ alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.50 38.0 3.51e-01 83.5% 60.9%
5067264 101.1.2.21 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.50 40.0 3.63e-01 88.2% 94.2%