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hypothetical_protein_A3303_gp094

Euk-Vir

Brazilian_marseillevirus

hypothetical_protein_A3303_gp094__YP_009238599__Brazilian_marseillevirus__1813599

Identity

Accession:
YP_009238599 ↗
Protein ID:
hypothetical_protein_A3303_gp094
Kingdom:
euk

Quality

65.7 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Brazilian_marseillevirus

TaxID: 1813599

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-104
PDB
Domain cluster: rep: IMGVR_UViG_3300009121_000002-3300009121-Ga0118671_100022858__D11-77
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fr5A00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.69 46.0 3.95e-01 74.4% 43.4%
5hsgA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 40.0 3.32e-01 81.4% 35.0%
2pvpA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 39.0 3.57e-01 73.3% 48.7%
4y9tA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 40.0 3.21e-01 84.9% 34.7%
3e5nA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 42.0 3.72e-01 77.9% 52.0%
5dteA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 35.0 2.99e-01 76.7% 34.0%
4r5qA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.57 41.0 3.11e-01 87.2% 30.2%
4ggmX02 3.40.140.80 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › LpxI C-terminal catalytic domain 0.56 40.0 3.32e-01 73.3% 50.0%
2yfqB03 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 40.0 3.43e-01 75.6% 55.0%
4ogzA02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 37.0 2.60e-01 70.9% 26.9%
2nwhA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.54 33.0 2.34e-01 94.2% 16.9%
2fgyA03 3.30.1330.140 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Carboxysome Shell Carbonic Anhydrase, C-terminal domain 0.53 36.0 3.34e-01 72.1% 66.7%
5c40B00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 36.0 2.48e-01 72.1% 21.5%
6wb4B01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 36.0 2.53e-01 74.4% 25.9%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5042416 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.77 54.0 4.24e-01 73.3% 38.2%
4947404 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.75 53.0 4.19e-01 73.3% 39.6%
5030015 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.73 53.0 4.23e-01 76.7% 40.6%
4093837 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.71 46.0 4.00e-01 74.4% 43.8%
3266139 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.70 46.0 3.90e-01 74.4% 41.4%
3182823 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.69 48.0 3.94e-01 74.4% 40.5%
4018051 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.68 46.0 3.93e-01 70.9% 42.9%
4012760 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.68 46.0 3.76e-01 73.3% 38.4%
4954666 3010.1.1.0 ↗ a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains 0.61 42.0 4.22e-01 70.9% 80.0%
3394097 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.54 39.0 3.73e-01 74.4% 82.0%
3190819 2488.1.1.7 ↗ a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › EMG1 0.54 39.0 2.91e-01 77.9% 88.1%
4029846 2488.1.1.7 ↗ a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › EMG1 0.54 40.0 3.07e-01 81.4% 92.2%
3719698 2488.1.1.7 ↗ a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › EMG1 0.53 38.0 3.15e-01 75.6% 63.6%
3607510 2488.1.1.7 ↗ a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › EMG1 0.53 38.0 2.87e-01 76.7% 88.5%
4968758 2008.1.1.224 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_3 0.52 37.0 3.63e-01 74.4% 67.4%
3957352 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.52 40.0 3.89e-01 87.2% 77.0%
2723920 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.51 36.0 2.52e-01 74.4% 25.8%
4124049 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.51 40.0 3.00e-01 84.9% 66.4%
4968936 2008.1.1.4 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.51 39.0 3.04e-01 86.0% 37.2%
5053065 225.1.1.7 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 0.50 34.0 2.49e-01 70.9% 76.8%