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hypothetical_protein_A3303_gp125

Euk-Vir

Brazilian_marseillevirus

hypothetical_protein_A3303_gp125__YP_009238630__Brazilian_marseillevirus__1813599

Identity

Accession:
YP_009238630 ↗
Protein ID:
hypothetical_protein_A3303_gp125
Kingdom:
euk

Quality

84.6 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Brazilian_marseillevirus

TaxID: 1813599

Cluster

View cluster (144 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-67
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fs2A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.69 57.0 3.77e-01 100.0% 23.2%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.66 50.0 3.76e-01 82.1% 53.6%
2ovrB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.65 51.0 4.72e-01 86.6% 82.8%
3f51C00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 43.0 3.97e-01 80.6% 54.4%
2ebyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 44.0 4.21e-01 80.6% 67.1%
3kxaA02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 37.0 3.75e-01 74.6% 69.7%
2k6xA00 1.10.220.120 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Sigma-70 factor, region 1.1 0.53 38.0 3.75e-01 77.6% 77.8%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3246390 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.78 51.0 6.06e-01 76.1% 100.0%
3231350 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.78 50.0 5.91e-01 76.1% 97.8%
3378759 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 50.0 5.93e-01 70.1% 100.0%
3866275 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.77 52.0 3.15e-01 70.1% 16.8%
3499806 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.76 53.0 5.31e-01 73.1% 100.0%
3208242 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.75 57.0 6.21e-01 91.0% 100.0%
3606403 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.73 53.0 5.41e-01 76.1% 86.2%
3208252 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.73 63.0 5.50e-01 95.5% 100.0%
3200311 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.72 56.0 5.32e-01 85.1% 100.0%
3751898 145.1.1.32 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_4 0.72 50.0 4.97e-01 73.1% 100.0%
3191984 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 58.0 5.11e-01 100.0% 60.0%
3837286 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.71 57.0 5.20e-01 88.1% 94.4%
3539114 145.1.1.32 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_4 0.70 52.0 3.66e-01 79.1% 35.7%
3323668 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.70 49.0 4.75e-01 73.1% 97.3%
3250931 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.70 49.0 4.75e-01 73.1% 94.7%
3189379 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.70 50.0 5.16e-01 76.1% 87.7%
None — 0.69 53.0 3.12e-01 82.1% 11.7%
3273645 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.68 47.0 4.46e-01 71.6% 98.8%
3881666 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.68 53.0 5.28e-01 85.1% 91.4%
3680513 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.68 45.0 5.12e-01 71.6% 100.0%
3425435 207.1.1.192 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_At1g61320_AtMIF1, LRR_At5g56370 0.68 52.0 3.14e-01 88.1% 12.1%
3472858 145.1.1.32 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_4 0.68 49.0 4.78e-01 76.1% 100.0%
3781279 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.68 47.0 4.46e-01 73.1% 88.7%
3515309 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.67 51.0 3.14e-01 86.6% 14.1%
3803894 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.66 58.0 5.63e-01 95.5% 97.3%
3811913 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.66 47.0 5.35e-01 86.6% 100.0%
None — 0.66 49.0 2.98e-01 86.6% 11.9%
3399970 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.65 57.0 3.90e-01 100.0% 27.1%
3419446 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.65 48.0 4.83e-01 89.6% 77.1%
None — 0.65 48.0 2.90e-01 86.6% 11.5%
3725291 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.65 57.0 5.13e-01 100.0% 77.9%
3311308 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.64 49.0 2.98e-01 89.6% 13.3%
3436290 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.63 50.0 5.16e-01 85.1% 100.0%
3708786 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.62 46.0 4.10e-01 80.6% 89.0%
3939710 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.62 51.0 5.20e-01 89.6% 93.8%
3211579 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.56 48.0 4.58e-01 97.0% 100.0%
4017103 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.55 44.0 2.89e-01 94.0% 60.8%
3491877 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.54 46.0 3.51e-01 100.0% 56.0%
D2 medium residues 215-270
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3uxgA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.82 73.0 5.17e-01 100.0% 41.7%
4jgiA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.68 58.0 5.20e-01 96.4% 98.8%
3wd6A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.64 53.0 4.34e-01 100.0% 89.8%
1lujB01 1.10.10.490 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Beta-catenin-interacting ICAT 0.54 36.0 3.72e-01 71.4% 88.7%
2gwgA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.52 42.0 2.73e-01 100.0% 48.5%
3l8kA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 40.0 2.86e-01 94.6% 47.0%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3257618 109.3.1.171 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF29011 0.87 79.0 5.55e-01 100.0% 38.7%
3999928 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.83 72.0 6.68e-01 94.6% 88.6%
3273273 109.3.1.171 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF29011 0.82 73.0 5.10e-01 100.0% 35.4%
4306725 109.3.1.20 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2,Ank_4 0.82 73.0 4.63e-01 100.0% 22.3%
3357666 109.59.1.16 ↗ alpha superhelices › Repetitive alpha hairpins › Intraflagellar transport protein 80 (IFT80) C-terminal domain › Intraflagellar transport protein 80 (IFT80) C-terminal domain › PPR 0.72 62.0 5.12e-01 100.0% 74.3%
3347410 109.4.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.70 60.0 4.63e-01 100.0% 51.1%
3813878 109.4.1.1258 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 0.70 62.0 3.91e-01 100.0% 25.9%
3324416 109.4.1.1257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 0.67 56.0 4.15e-01 100.0% 43.6%
3314757 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.67 56.0 3.98e-01 100.0% 43.6%
3308316 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.62 52.0 4.42e-01 100.0% 66.0%
3197080 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 50.0 3.53e-01 100.0% 42.9%
3276944 604.12.1.2 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 0.53 37.0 3.51e-01 78.6% 86.7%