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hypothetical_protein_A3303_gp189

Euk-Vir

Brazilian_marseillevirus

hypothetical_protein_A3303_gp189__YP_009238694__Brazilian_marseillevirus__1813599

Identity

Accession:
YP_009238694 ↗
Protein ID:
hypothetical_protein_A3303_gp189
Kingdom:
euk

Quality

80.2 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Brazilian_marseillevirus

TaxID: 1813599

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-62
PDB
Domain cluster: rep: hypothetical_protein_D1R32_gp072__YP_009506834__Tunisvirus_fontaine2__1421067__D1-60
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19083.6 best DUF5774 60.4 2.60e-16 95.2% 46.3%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 45.0 3.99e-01 75.8% 83.3%
2mj6A00 3.30.450.250 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.60 52.0 4.67e-01 100.0% 87.8%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 46.0 3.96e-01 87.1% 51.4%
1nz8A00 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.58 40.0 3.27e-01 72.6% 85.7%
2lfvA00 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.57 37.0 3.20e-01 96.8% 38.7%
2h7fX02 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.57 46.0 3.17e-01 93.5% 34.0%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 45.0 3.93e-01 91.9% 68.9%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 3.82e-01 88.7% 57.3%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 3.75e-01 88.7% 54.7%
1kyzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 3.75e-01 87.1% 67.0%
2bbaA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 36.0 2.64e-01 90.3% 22.2%
3pm9A04 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 41.0 3.75e-01 95.2% 57.5%
1ug8A00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.56 40.0 3.69e-01 100.0% 56.3%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.55 39.0 2.95e-01 77.4% 79.2%
3e0jA01 3.60.21.50 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › 0.54 45.0 3.00e-01 100.0% 80.9%
1c4kA04 3.90.100.10 Alpha Beta › Alpha-Beta Complex › Ornithine Decarboxylase; Chain A, domain 4 › Orn/Lys/Arg decarboxylase, C-terminal domain 0.54 36.0 2.93e-01 100.0% 33.3%
6lbsB01 3.30.1370.230 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain 0.53 45.0 4.17e-01 93.5% 86.1%
2mh9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 43.0 3.59e-01 98.4% 96.9%
4dzrA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 46.0 3.43e-01 100.0% 80.4%
2byvE05 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 40.0 3.78e-01 85.5% 78.5%
4ndhB00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.52 41.0 3.12e-01 93.5% 42.7%
2rrnA01 3.30.70.2040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 38.0 3.57e-01 100.0% 61.4%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 3.67e-01 88.7% 77.5%
3i24B00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.52 42.0 3.42e-01 98.4% 51.1%
3jamZ00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 3.58e-01 90.3% 68.6%
1vq8R00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.51 39.0 2.97e-01 82.3% 82.0%
3viqA00 6.10.140.1020 Special › Helix non-globular › Helix Hairpins › 0.51 43.0 3.53e-01 100.0% 63.1%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.50 42.0 3.21e-01 100.0% 59.4%
4bxiA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.50 35.0 2.76e-01 74.2% 32.2%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4666309 101.1.21.0 ↗ alpha arrays › HTH › HTH › HTH in T7 RNA polymerase 0.71 56.0 3.82e-01 88.7% 41.3%
3947872 205.1.1.17 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_11 0.61 44.0 3.27e-01 100.0% 30.3%
3579538 389.1.1.152 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › Ephrin_rec_like, EGF_3 0.60 34.0 2.55e-01 74.2% 22.7%
3232527 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 47.0 4.07e-01 91.9% 73.3%
4028041 4015.1.1.1 ↗ alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1 0.58 43.0 2.82e-01 90.3% 18.3%
3488211 387.1.1.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.58 37.0 3.28e-01 95.2% 43.3%
4450739 2003.1.5.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 0.57 49.0 3.14e-01 100.0% 51.8%
4063927 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.57 39.0 2.82e-01 72.6% 35.3%
3513179 388.1.1.0 ↗ few secondary structure elements › Huristasin-like › Huristasin-like › Huristasin-like 0.57 36.0 3.72e-01 87.1% 66.7%
4250657 513.2.1.0 ↗ a+b two layers › Obg GTP-binding protein C-terminal domain-like › Putative transferase PH0793 N-terminal domain › Putative transferase PH0793 N-terminal domain 0.57 48.0 3.11e-01 100.0% 54.5%
4098328 304.24.1.3 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.57 39.0 3.28e-01 72.6% 60.9%
4037134 812.1.1.1 ↗ a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE 0.56 39.0 3.76e-01 74.2% 64.3%
4133554 304.24.1.21 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C+EFG_III 0.56 39.0 2.85e-01 74.2% 35.3%
4934098 304.19.1.1 ↗ a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.56 40.0 3.68e-01 95.2% 56.5%
3228509 101.1.4.12 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MSC 0.55 44.0 3.50e-01 90.3% 59.3%
3622588 101.1.2.24 ↗ alpha arrays › HTH › HTH › winged helix domain › MAGE 0.55 41.0 2.91e-01 87.1% 59.2%
3216951 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 41.0 3.27e-01 83.9% 72.1%
3734132 3542.1.1.3 ↗ alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B 0.55 44.0 2.84e-01 90.3% 54.3%
1503829 3512.1.1.2 ↗ beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › YadA_stalk 0.54 32.0 2.01e-01 74.2% 9.8%
3706721 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 42.0 3.99e-01 87.1% 73.3%
4983137 882.1.1.4 ↗ a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding 0.54 39.0 3.16e-01 95.2% 37.0%
3891889 11.1.1.633 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › KIAA0319 0.54 41.0 3.27e-01 95.2% 37.9%
5002351 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.53 43.0 2.68e-01 90.3% 18.4%
3202492 387.1.1.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.52 30.0 3.50e-01 91.9% 100.0%
3469919 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.52 44.0 4.19e-01 98.4% 85.3%
4973377 3110.1.1.0 ↗ a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain 0.52 43.0 3.30e-01 100.0% 98.8%
4936526 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.52 42.0 3.29e-01 90.3% 50.0%
3664523 304.55.1.15 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Helitron_like_N 0.52 35.0 3.02e-01 74.2% 40.7%
1211453 2498.1.1.23 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M49 0.52 42.0 2.47e-01 100.0% 39.6%
5028560 304.39.1.0 ↗ a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.52 45.0 3.73e-01 96.8% 81.8%
3220395 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.52 34.0 3.45e-01 95.2% 67.7%
3613789 70.3.1.1 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.52 43.0 3.39e-01 100.0% 72.0%
3576201 10.12.1.38 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PCO_ADO 0.51 45.0 3.52e-01 98.4% 81.5%
4449508 331.2.1.13 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › DinI 0.51 38.0 3.62e-01 100.0% 66.3%
3201882 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 40.0 2.90e-01 96.8% 97.0%
4266807 812.1.1.1 ↗ a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE 0.51 34.0 3.76e-01 74.2% 100.0%
3869919 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.50 43.0 3.37e-01 100.0% 62.8%
3454041 304.151.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase 0.50 39.0 3.21e-01 95.2% 42.2%
4388283 304.162.1.1 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.50 35.0 3.39e-01 95.2% 65.7%
D2 medium residues 63-145
PDB
Domain cluster: rep: hypothetical_protein_D1R32_gp061__YP_009506823__Tunisvirus_fontaine2__1421067__D79-155
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19083.6 best DUF5774 40.8 3.10e-10 92.8% 52.0%