←Back to structures

hypothetical_protein_A3303_gp353

Euk-Vir

Brazilian_marseillevirus

hypothetical_protein_A3303_gp353__YP_009238858__Brazilian_marseillevirus__1813599

Identity

Accession:
YP_009238858 ↗
Protein ID:
hypothetical_protein_A3303_gp353
Kingdom:
euk

Quality

85.0 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Brazilian_marseillevirus

TaxID: 1813599

Cluster

View cluster (16 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 10-64
PDB
Domain cluster: rep: hypothetical_protein_MEL_058__YP_009094559__Melbournevirus__1560514__D13-65
D2 medium residues 65-116
PDB
Domain cluster: rep: zinc_finger_protein__YP_009345546__Noumeavirus__1955558__D67-117
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2janA02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.84 71.0 5.58e-01 90.4% 79.2%
1umqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.79 65.0 6.16e-01 98.1% 76.7%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 61.0 6.30e-01 94.2% 100.0%
2rklF00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.71 44.0 4.44e-01 86.5% 63.5%
2pmrA00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.70 44.0 3.82e-01 86.5% 43.4%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.68 46.0 4.10e-01 71.2% 50.0%
1e94A00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.67 57.0 3.98e-01 96.2% 70.1%
1hp8A00 1.10.287.1130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › CytochromE C oxidase copper chaperone 0.66 50.0 4.63e-01 82.7% 77.9%
6fhoA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 44.0 2.94e-01 71.2% 19.2%
3d7iB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.62 51.0 4.28e-01 100.0% 52.0%
2id3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 50.0 5.11e-01 94.2% 100.0%
3o3mB01 1.20.1270.370 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.61 50.0 4.03e-01 92.3% 91.3%
1wpbG01 1.10.287.680 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.60 39.0 3.93e-01 78.8% 64.8%
2k85A00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.59 50.0 4.73e-01 100.0% 98.5%
2ckzA01 6.10.140.870 Special › Helix non-globular › Helix Hairpins › 0.58 44.0 4.57e-01 88.5% 89.6%
4b94A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 46.0 3.51e-01 98.1% 99.3%
1oqyA03 1.10.10.540 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › XPC-binding domain 0.54 42.0 4.14e-01 96.2% 94.8%
2xpiD00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 46.0 2.68e-01 100.0% 26.4%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3169446 101.1.2.109 ↗ alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.78 64.0 5.81e-01 90.4% 72.9%
5080257 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.77 63.0 6.07e-01 100.0% 80.0%
4995716 101.43.1.0 ↗ alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.76 65.0 6.20e-01 96.2% 93.3%
3403406 101.1.1.103 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF4817 0.74 62.0 6.36e-01 92.3% 98.0%
3704050 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 58.0 5.91e-01 88.5% 90.0%
2813092 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.70 60.0 3.82e-01 98.1% 91.4%
4044443 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.66 53.0 5.28e-01 100.0% 83.6%
3198473 109.27.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.66 53.0 3.55e-01 90.4% 48.1%
4586835 101.1.1.36 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.65 56.0 5.24e-01 100.0% 89.2%
5053568 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 49.0 3.61e-01 88.5% 73.3%
3764999 4995.1.1.0 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like 0.59 49.0 4.37e-01 98.1% 63.7%
4934097 102.3.1.0 ↗ alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain 0.56 46.0 3.98e-01 94.2% 65.9%
3438800 108.1.1.23 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › RST 0.55 47.0 4.21e-01 92.3% 84.3%