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hypothetical_protein_A3303_gp376
Euk-VirBrazilian_marseillevirus
hypothetical_protein_A3303_gp376__YP_009238881__Brazilian_marseillevirus__1813599
Identity
- Accession:
- YP_009238881 ↗
- Protein ID:
- hypothetical_protein_A3303_gp376
- Kingdom:
- euk
Quality
82.3
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Marseilleviridae›
Marseillevirus›
Brazilian_marseillevirus
TaxID: 1813599
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 22-77
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5xnsC00 | 1.10.10.580 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E | 0.72 | 40.0 | 3.76e-01 | 96.4% | 44.3% |
| 1z6oA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.68 | 40.0 | 2.69e-01 | 100.0% | 15.1% |
| 4k7jA01 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.66 | 58.0 | 3.89e-01 | 100.0% | 98.2% |
| 4rw0A00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.65 | 57.0 | 3.99e-01 | 100.0% | 97.8% |
| 4a64C03 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.65 | 40.0 | 3.32e-01 | 100.0% | 33.0% |
| 2yhwA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.64 | 47.0 | 3.39e-01 | 78.6% | 33.5% |
| 2vqgA00 | 1.10.10.1280 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Alpha-helical porin B/porin C | 0.64 | 46.0 | 4.20e-01 | 100.0% | 56.6% |
| 8adbA01 | 3.90.70.120 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.62 | 47.0 | 3.17e-01 | 96.4% | 22.2% |
| 1ctnA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.62 | 43.0 | 2.63e-01 | 73.2% | 22.5% |
| 4c1bA02 | 3.40.50.12700 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 55.0 | 4.44e-01 | 100.0% | 74.8% |
| 3lmmB05 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 35.0 | 3.49e-01 | 83.9% | 49.2% |
| 2p8tA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 44.0 | 4.05e-01 | 78.6% | 74.7% |
| 3wgtA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 48.0 | 3.31e-01 | 100.0% | 99.5% |
| 3rv0C02 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.54 | 46.0 | 3.51e-01 | 100.0% | 54.9% |
| 1hjrA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 42.0 | 3.12e-01 | 94.6% | 100.0% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5026007 | 101.1.2.895 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF2250 | 0.67 | 51.0 | 3.60e-01 | 82.1% | 27.4% |
| 4301189 | 3812.1.1.4 ↗ | alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE › GrpE | 0.65 | 41.0 | 4.03e-01 | 73.2% | 60.0% |
| 3681103 | 2004.1.1.192 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 | 0.63 | 49.0 | 3.14e-01 | 87.5% | 18.4% |
| 5038345 | 172.1.1.1 ↗ | alpha complex topology › Citrate synthase-like › Citrate synthase › Citrate synthase › Citrate_synt | 0.63 | 47.0 | 2.88e-01 | 100.0% | 12.7% |
| 2528261 | 8002.1.1.1 ↗ | alpha bundles › Zn-binding domain in glutaminyl-tRNA synthetase › Zn-binding domain in glutaminyl-tRNA synthetase › Zn-binding domain in glutaminyl-tRNA synthetase › tRNA-synt_1c | 0.61 | 38.0 | 3.26e-01 | 100.0% | 35.7% |
| 3658872 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 40.0 | 3.47e-01 | 71.4% | 91.1% |
| 3367443 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.55 | 41.0 | 4.07e-01 | 80.4% | 80.0% |
| 4030910 | 2004.1.1.196 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 | 0.51 | 38.0 | 2.61e-01 | 82.1% | 60.0% |
| 3286301 | 4168.1.1.1 ↗ | alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain › HAMP | 0.50 | 38.0 | 3.83e-01 | 78.6% | 85.5% |