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hypothetical_protein_A3303_gp450

Euk-Vir

Brazilian_marseillevirus

hypothetical_protein_A3303_gp450__YP_009238955__Brazilian_marseillevirus__1813599

Identity

Accession:
YP_009238955 ↗
Protein ID:
hypothetical_protein_A3303_gp450
Kingdom:
euk

Quality

78.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 23-74
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gv4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.73 60.0 4.85e-01 100.0% 47.5%
2lvhA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.70 54.0 5.81e-01 86.5% 95.6%
3h8vB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.70 52.0 3.42e-01 80.8% 56.8%
2l6oA01 2.40.10.320 Mainly Beta › Beta Barrel › Thrombin, subunit H › Uncharacterised protein PF13642 yp_926445, N-terminal domain 0.67 54.0 4.93e-01 92.3% 76.4%
1eg3A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.66 35.0 3.98e-01 92.3% 68.4%
3tiiA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.63 47.0 4.45e-01 86.5% 66.2%
1sjiA03 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.62 42.0 3.30e-01 73.1% 34.7%
2ia0B02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.60 46.0 3.89e-01 88.5% 83.8%
2mygA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 41.0 3.38e-01 73.1% 40.2%
3fo8D02 2.40.10.380 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 49.0 4.21e-01 100.0% 82.4%
5u81A01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.59 48.0 3.18e-01 100.0% 90.0%
6phxA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 42.0 3.54e-01 82.7% 44.2%
6dxwA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.58 47.0 3.21e-01 100.0% 95.2%
3ppuB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 42.0 2.95e-01 80.8% 68.1%
4qglA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 42.0 3.04e-01 82.7% 75.3%
4i6xA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 39.0 3.13e-01 76.9% 38.5%
4kfuA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 42.0 2.96e-01 88.5% 46.8%
5hkxA04 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 41.0 4.34e-01 84.6% 97.7%
2bayE00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 42.0 4.09e-01 88.5% 79.7%
1m0wB05 3.30.1490.50 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Glutathione synthase lid domain 0.53 36.0 3.54e-01 76.9% 63.3%
3vk6A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.52 40.0 3.94e-01 90.4% 81.4%
1atiB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.51 40.0 3.37e-01 100.0% 67.0%
2fsuA00 3.40.50.11310 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Bacterial phosphonate metabolism protein PhnH 0.51 40.0 2.97e-01 96.2% 78.2%
5trbA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.51 39.0 3.67e-01 100.0% 68.1%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3885453 386.1.1.257 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_Z280C_D 0.79 55.0 6.12e-01 88.5% 95.0%
5059796 4326.1.1.0 a+b two layers › ERH-like › ERH-like › ERH-like 0.77 68.0 6.22e-01 100.0% 85.5%
3483496 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.75 57.0 6.09e-01 86.5% 93.3%
3675525 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.74 64.0 5.86e-01 98.1% 79.4%
3470859 386.1.1.1 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.73 58.0 5.01e-01 86.5% 92.5%
3307947 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.73 52.0 5.73e-01 98.1% 97.5%
3914802 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.72 59.0 5.50e-01 88.5% 70.8%
3845539 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.72 52.0 4.35e-01 86.5% 44.4%
3581478 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.71 50.0 4.81e-01 86.5% 65.0%
3623052 376.1.1.5 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.71 56.0 4.27e-01 100.0% 37.5%
3772534 386.1.1.1 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.71 51.0 4.38e-01 86.5% 47.1%
3911109 386.1.1.290 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Zf-C2H2_ZNF451_C 0.70 60.0 5.07e-01 96.2% 57.6%
3701263 386.1.1.266 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF27771 0.69 49.0 5.13e-01 82.7% 86.7%
3245932 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.69 52.0 5.47e-01 80.8% 100.0%
3538735 376.1.1.5 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.69 61.0 4.65e-01 100.0% 43.3%
3751321 386.1.1.323 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Zf-C2H2_ZNF451_2nd 0.68 56.0 4.12e-01 94.2% 90.3%
3992020 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.68 52.0 5.36e-01 86.5% 88.0%
3853801 386.1.1.398 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, Zf-C2H2_ZNF451_2nd, Zf-C2H2_ZNF451 0.67 56.0 3.67e-01 94.2% 54.8%
3853799 386.1.1.290 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Zf-C2H2_ZNF451_C 0.67 57.0 5.06e-01 94.2% 74.7%
3859106 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.67 51.0 5.44e-01 86.5% 95.6%
3545113 386.1.1.126 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_7th_ZNF462 0.67 51.0 5.41e-01 80.8% 100.0%
3923587 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.67 52.0 5.55e-01 84.6% 100.0%
3213253 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 53.0 3.58e-01 86.5% 76.7%
3348160 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 50.0 5.21e-01 94.2% 87.5%
3227231 822.1.1.1 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.66 55.0 5.21e-01 100.0% 79.4%
3574854 375.1.1.267 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Mcm10, zf-CCCH_Mcm10 0.66 42.0 3.59e-01 86.5% 40.0%
3576729 375.1.1.146 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CCCH_Mcm10 0.65 42.0 4.16e-01 86.5% 61.8%
3407954 386.1.1.24 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_4 0.65 55.0 4.58e-01 94.2% 87.8%
3627027 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 41.0 4.47e-01 86.5% 85.0%
3920052 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.64 54.0 4.12e-01 98.1% 97.7%
3336399 386.1.1.63 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_3rep 0.63 53.0 4.96e-01 94.2% 78.5%
3921390 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 52.0 4.15e-01 92.3% 63.8%
3213903 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 47.0 3.95e-01 86.5% 46.3%
3411266 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 53.0 4.61e-01 96.2% 68.8%
3698302 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 47.0 4.70e-01 86.5% 80.0%
3891185 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 51.0 4.93e-01 92.3% 83.3%
3407136 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 52.0 3.25e-01 94.2% 17.8%
3890764 386.1.1.1 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.61 50.0 4.17e-01 90.4% 58.9%
2414543 2003.1.9.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.59 49.0 3.11e-01 96.2% 50.9%
3630611 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 50.0 4.41e-01 100.0% 63.7%
3579412 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 42.0 3.99e-01 80.8% 100.0%
3483303 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.57 43.0 4.10e-01 86.5% 100.0%
5073739 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 44.0 3.99e-01 98.1% 61.3%
3478408 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.57 46.0 4.10e-01 94.2% 66.3%
3510027 2485.1.1.81 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › TraF 0.57 40.0 2.46e-01 76.9% 12.5%
3637145 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.56 45.0 3.92e-01 96.2% 74.4%
3196969 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.54 41.0 3.83e-01 88.5% 87.1%
3918037 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.53 42.0 3.94e-01 90.4% 81.5%
3713646 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.51 40.0 3.22e-01 90.4% 91.8%
3782724 376.1.1.22 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.50 38.0 3.76e-01 88.5% 91.5%
D2 medium residues 75-133
PDB
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1umqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 60.0 5.98e-01 98.3% 86.7%
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 59.0 5.74e-01 91.5% 80.3%
1hp8A00 1.10.287.1130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › CytochromE C oxidase copper chaperone 0.64 47.0 4.50e-01 78.0% 82.4%
3b4qA00 1.10.1200.100 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › conserved protein domain from corynebacterium diphtheriae 0.62 41.0 3.65e-01 72.9% 47.1%
2id3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 45.0 4.80e-01 81.4% 100.0%
1c3cA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.59 43.0 3.75e-01 78.0% 79.1%
1kkxA00 1.10.150.60 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › ARID DNA-binding domain 0.56 46.0 3.96e-01 94.9% 79.4%
4malA00 1.20.58.2200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 42.0 4.27e-01 83.1% 81.4%
2k19A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.55 41.0 3.50e-01 83.1% 49.0%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 38.0 3.21e-01 74.6% 46.9%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 43.0 3.87e-01 91.5% 75.0%
2rklF00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.53 37.0 3.94e-01 74.6% 98.1%
1kfdA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.52 37.0 3.47e-01 74.6% 63.4%
2xv9A00 1.10.533.30 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Nematode polyprotein allergen ABA-1 0.52 41.0 3.36e-01 98.3% 90.3%
2pmrA00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.52 38.0 3.55e-01 94.9% 61.8%
2p5tA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.51 38.0 3.29e-01 78.0% 52.2%
2cr7A01 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.50 37.0 3.68e-01 89.8% 79.4%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5080257 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.78 58.0 5.78e-01 86.4% 78.3%
4323683 101.35.1.5 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.76 66.0 5.33e-01 96.6% 85.5%
4995716 101.43.1.0 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.76 58.0 5.79e-01 83.1% 93.3%
3403406 101.1.1.103 alpha arrays › HTH › HTH › Three-helical HTH › DUF4817 0.75 56.0 6.01e-01 79.7% 98.0%
3704050 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 54.0 5.71e-01 78.0% 92.0%
2813092 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.66 57.0 3.76e-01 100.0% 34.5%
4929245 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.57 41.0 4.02e-01 83.1% 81.4%
4931837 3843.1.1.28 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › MbhD 0.56 38.0 3.65e-01 71.2% 64.3%
3822871 108.1.1.23 alpha arrays › EF-hand › EF-hand-related › EF-hand › RST 0.54 38.0 3.86e-01 76.3% 81.7%
4329615 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.54 38.0 3.60e-01 72.9% 61.4%
4048994 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.54 46.0 2.94e-01 100.0% 66.5%
3378995 108.1.1.111 alpha arrays › EF-hand › EF-hand-related › EF-hand › DUF7952 0.54 39.0 4.01e-01 78.0% 89.1%
3438800 108.1.1.23 alpha arrays › EF-hand › EF-hand-related › EF-hand › RST 0.53 39.0 3.75e-01 81.4% 75.7%
3274626 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.51 45.0 2.72e-01 100.0% 23.2%
4024170 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.51 36.0 3.65e-01 78.0% 85.0%
3442087 108.1.1.23 alpha arrays › EF-hand › EF-hand-related › EF-hand › RST 0.51 36.0 3.61e-01 78.0% 78.1%