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hypothetical_protein_AP053_gp116

Euk-Vir

Ostreococcus_mediterraneus_virus_1

hypothetical_protein_AP053_gp116__YP_009172876__Ostreococcus_mediterraneus_virus_1__1663210

Identity

Accession:
YP_009172876 ↗
Protein ID:
hypothetical_protein_AP053_gp116
Kingdom:
euk

Quality

64.8 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Prasinovirus› Ostreococcus_mediterraneus_virus_1

TaxID: 1663210

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 45-95
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gv4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.65 50.0 4.09e-01 86.3% 55.6%
3lifB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 40.0 3.00e-01 70.6% 77.1%
1y8fA00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.59 46.0 4.70e-01 92.2% 92.2%
4b6dB00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.59 46.0 4.52e-01 90.2% 84.2%
2rowA01 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.58 45.0 4.24e-01 94.1% 93.0%
3b08E00 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.58 34.0 3.25e-01 80.4% 42.4%
3v43A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 43.0 3.44e-01 84.3% 47.3%
1imvA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.57 47.0 3.41e-01 100.0% 76.3%
2awnC02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 45.0 4.02e-01 94.1% 94.9%
6iouA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 38.0 3.04e-01 72.5% 95.5%
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.55 33.0 3.68e-01 80.4% 87.9%
1twfI01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 34.0 3.50e-01 70.6% 65.2%
1nuiA01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.54 37.0 3.80e-01 86.3% 86.0%
3n5oA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 41.0 3.49e-01 86.3% 71.9%
2jx8A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.52 33.0 3.43e-01 74.5% 70.2%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 40.0 3.37e-01 100.0% 48.5%
2vldA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.50 35.0 3.01e-01 84.3% 78.9%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3685711 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.77 58.0 6.07e-01 84.3% 91.1%
3203266 376.1.2.26 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › PF28755 0.74 56.0 5.88e-01 84.3% 93.3%
4030389 376.1.2.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_4 0.72 61.0 5.07e-01 98.0% 81.1%
2320838 376.1.2.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_4 0.67 56.0 4.88e-01 98.0% 84.3%
3238004 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.67 57.0 5.77e-01 100.0% 98.0%
3941015 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.66 51.0 5.00e-01 88.2% 89.1%
3869599 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.65 46.0 4.71e-01 78.4% 92.0%
3540261 376.1.2.28 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › zf-FCS 0.63 45.0 4.48e-01 82.4% 90.9%
3815847 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.63 43.0 4.52e-01 74.5% 91.1%
3828760 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.62 45.0 4.66e-01 80.4% 97.8%
3367860 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.62 46.0 4.85e-01 84.3% 97.8%
3848925 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.61 47.0 4.57e-01 88.2% 79.7%
3807548 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.61 51.0 4.10e-01 100.0% 82.7%
3808141 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.60 43.0 3.46e-01 78.4% 51.8%
3317581 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.60 45.0 4.23e-01 84.3% 80.0%
3832663 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.60 45.0 4.31e-01 84.3% 88.3%
3771418 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.60 46.0 4.72e-01 90.2% 92.0%
3815420 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.60 44.0 4.40e-01 84.3% 100.0%
3829244 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.60 44.0 4.19e-01 84.3% 78.5%
3486396 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.60 47.0 4.70e-01 94.1% 94.5%
3802434 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.59 42.0 4.19e-01 78.4% 96.4%
4902610 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.59 48.0 3.33e-01 96.1% 53.8%
3448322 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.58 44.0 4.24e-01 84.3% 91.7%
3658249 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.58 42.0 3.41e-01 80.4% 50.0%
3827797 376.1.3.70 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › C1_2 0.58 43.0 4.40e-01 82.4% 100.0%
2795835 64.1.1.3 ↗ beta meanders › WW domain-like › WW domain › WW domain › MBD 0.58 44.0 4.43e-01 82.4% 92.0%
3828931 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.58 43.0 4.07e-01 84.3% 78.5%
3805057 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 42.0 4.36e-01 80.4% 95.6%
3924878 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.57 47.0 4.67e-01 98.0% 96.4%
3222046 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.57 47.0 4.46e-01 98.0% 86.2%
3967552 375.1.1.71 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF2387 0.57 42.0 4.36e-01 90.2% 95.6%
3807146 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.57 42.0 3.64e-01 84.3% 64.4%
3836819 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.57 45.0 4.34e-01 90.2% 98.3%
3741203 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.57 47.0 4.53e-01 100.0% 96.7%
3826491 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.57 42.0 4.10e-01 84.3% 98.3%
3803741 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.57 41.0 4.08e-01 80.4% 92.7%
3818231 376.1.2.40 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1, C1_2 0.56 45.0 3.72e-01 90.2% 62.1%
3832466 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.56 45.0 3.66e-01 100.0% 80.0%
3371152 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.56 41.0 3.84e-01 84.3% 82.9%
3811724 252.1.1.1 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.55 42.0 4.10e-01 86.3% 77.6%
3806362 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.55 40.0 3.45e-01 82.4% 62.2%
3309791 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.55 40.0 4.21e-01 82.4% 95.6%
3436712 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.55 41.0 3.86e-01 84.3% 92.3%
3502549 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.55 41.0 3.76e-01 84.3% 70.0%
3827345 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.55 40.0 3.17e-01 82.4% 93.3%
3833973 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.54 41.0 3.88e-01 84.3% 86.2%
3820281 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.54 45.0 4.60e-01 100.0% 100.0%
4968450 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 37.0 3.70e-01 74.5% 76.4%
3417364 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 39.0 3.87e-01 80.4% 96.4%
3835032 252.1.1.1 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.54 41.0 4.33e-01 86.3% 97.8%
3299628 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.54 40.0 3.65e-01 84.3% 84.0%
3807932 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.53 43.0 3.49e-01 100.0% 62.8%
5024903 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 37.0 3.74e-01 78.4% 76.0%
3801858 252.1.1.0 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.52 41.0 4.00e-01 92.2% 81.7%
3204334 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.52 35.0 3.60e-01 72.5% 76.0%
3208203 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.52 32.0 3.17e-01 70.6% 52.7%
4993925 375.1.1.338 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7479 0.52 35.0 3.54e-01 72.5% 84.0%
3701501 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 38.0 3.73e-01 94.1% 90.8%
4795746 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 36.0 2.77e-01 82.4% 38.4%
3295810 386.1.1.249 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF25908 0.51 42.0 3.69e-01 100.0% 63.5%
5028776 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 34.0 3.50e-01 72.5% 76.0%
5070745 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 31.0 3.31e-01 76.5% 68.9%
3550110 375.10.1.3 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf_DPOE_2 0.51 35.0 3.18e-01 98.0% 50.7%