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hypothetical_protein_AP053_gp135
Euk-VirOstreococcus_mediterraneus_virus_1
hypothetical_protein_AP053_gp135__YP_009172895__Ostreococcus_mediterraneus_virus_1__1663210
Identity
- Accession:
- YP_009172895 ↗
- Protein ID:
- hypothetical_protein_AP053_gp135
- Kingdom:
- euk
Quality
62.4
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Algavirales›
Phycodnaviridae›
Prasinovirus›
Ostreococcus_mediterraneus_virus_1
TaxID: 1663210
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-148
D2
high
residues 359-472
Domain cluster:
rep: S16_GE16_scaffold_10741_prodigal-single.1__X__X__00139__D134-247
D3
medium
residues 156-204
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5dukB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 55.0 | 4.93e-01 | 81.6% | 79.1% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.71 | 48.0 | 3.73e-01 | 71.4% | 65.1% |
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.70 | 48.0 | 4.84e-01 | 71.4% | 89.8% |
| 4d6wB02 | 6.10.140.740 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 47.0 | 3.87e-01 | 73.5% | 39.1% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.68 | 46.0 | 4.01e-01 | 71.4% | 53.2% |
| 1gcbA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.67 | 48.0 | 2.84e-01 | 77.6% | 35.7% |
| 5w6lA01 | 3.40.50.11550 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.64 | 49.0 | 3.25e-01 | 87.8% | 88.1% |
| 1m62A00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.64 | 54.0 | 4.56e-01 | 100.0% | 94.3% |
| 1lujB01 | 1.10.10.490 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Beta-catenin-interacting ICAT | 0.63 | 53.0 | 5.16e-01 | 91.8% | 94.3% |
| 1r5aA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.63 | 51.0 | 3.88e-01 | 98.0% | 89.7% |
| 2ra1A02 | 1.20.58.780 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 43.0 | 3.97e-01 | 73.5% | 100.0% |
| 5jrcA00 | 1.20.58.2140 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 53.0 | 3.63e-01 | 100.0% | 58.6% |
| 3bddD00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 53.0 | 3.94e-01 | 100.0% | 57.6% |
| 2j5oA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 47.0 | 4.34e-01 | 85.7% | 96.9% |
| 2kp8A00 | 1.20.5.170 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.61 | 42.0 | 3.75e-01 | 73.5% | 58.3% |
| 2c5iT00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 50.0 | 4.18e-01 | 100.0% | 97.9% |
| 1vinA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.61 | 46.0 | 3.49e-01 | 89.8% | 95.7% |
| 6xxvC00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.59 | 40.0 | 3.20e-01 | 71.4% | 37.8% |
| 2lrmA00 | 1.10.890.30 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein | 0.59 | 38.0 | 3.34e-01 | 75.5% | 39.3% |
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.58 | 42.0 | 3.86e-01 | 77.6% | 64.2% |
| 1zc6A02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 48.0 | 3.45e-01 | 100.0% | 30.8% |
| 1c9bA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.56 | 43.0 | 3.33e-01 | 81.6% | 63.2% |
| 2jrtA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 41.0 | 3.49e-01 | 81.6% | 70.9% |
| 1ykhA00 | 6.10.140.200 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 39.0 | 3.27e-01 | 77.6% | 43.2% |
| 2y4tA02 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.55 | 38.0 | 3.77e-01 | 73.5% | 75.0% |
| 1rajA01 | 4.10.880.10 | Few Secondary Structures › Irregular › Poliovirus 3D polymerase; domain 1 (Nucleotidyltransferase) › Poliovirus 3D polymerase Domain 1 (Nucleotidyltransferase) | 0.55 | 38.0 | 3.95e-01 | 73.5% | 97.7% |
| 1jeyB03 | 1.10.1600.10 | Mainly Alpha › Orthogonal Bundle › Ku70; Chain: A; domain 4 › | 0.53 | 36.0 | 3.03e-01 | 75.5% | 84.3% |
| 2yf4F00 | 1.10.3420.10 | Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain | 0.51 | 43.0 | 3.05e-01 | 93.9% | 81.8% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4929317 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 54.0 | 5.43e-01 | 75.5% | 100.0% |
| 5062267 | 101.1.2.673 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N | 0.72 | 54.0 | 4.91e-01 | 81.6% | 100.0% |
| 4970238 | 101.1.2.673 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N | 0.72 | 59.0 | 4.62e-01 | 91.8% | 67.6% |
| 5044679 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.71 | 51.0 | 3.14e-01 | 77.6% | 37.3% |
| 5003077 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.71 | 56.0 | 5.04e-01 | 87.8% | 95.7% |
| 3738604 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 61.0 | 4.83e-01 | 100.0% | 70.5% |
| 5032601 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.68 | 53.0 | 5.12e-01 | 85.7% | 98.2% |
| 3882493 | 633.23.1.34 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › CD20 | 0.68 | 56.0 | 3.94e-01 | 91.8% | 81.3% |
| 5054107 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.68 | 54.0 | 3.47e-01 | 91.8% | 42.4% |
| 3493322 | 2006.1.1.8 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › 5_nucleotid | 0.67 | 50.0 | 3.13e-01 | 79.6% | 25.2% |
| 3210948 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.66 | 45.0 | 3.83e-01 | 71.4% | 46.3% |
| 4096141 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.65 | 47.0 | 3.97e-01 | 81.6% | 73.3% |
| 5058740 | 5060.1.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39 | 0.64 | 51.0 | 3.97e-01 | 91.8% | 46.1% |
| 5016090 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 55.0 | 4.71e-01 | 98.0% | 85.0% |
| 3940151 | 604.33.1.0 ↗ | alpha bundles › Spectrin repeat-like › Repulsive guidance molecule (RGM) N-terminal domain › Repulsive guidance molecule (RGM) N-terminal domain | 0.64 | 47.0 | 3.65e-01 | 79.6% | 66.4% |
| 3699668 | 2004.1.1.164 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc | 0.63 | 48.0 | 3.03e-01 | 81.6% | 61.9% |
| 3972755 | 601.1.2.99 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › DAGK_prokar | 0.61 | 43.0 | 3.31e-01 | 73.5% | 33.9% |
| 3253203 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.61 | 46.0 | 4.64e-01 | 87.8% | 100.0% |
| 4430060 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.61 | 42.0 | 2.89e-01 | 71.4% | 86.9% |
| 3170875 | 5051.1.1.6 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans | 0.61 | 43.0 | 2.58e-01 | 79.6% | 73.8% |
| 4974229 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.60 | 41.0 | 2.88e-01 | 71.4% | 38.3% |
| 5080952 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 46.0 | 3.89e-01 | 93.9% | 71.6% |
| 4216245 | 4082.1.1.1 ↗ | alpha duplicates or obligate multimers › Hairy Orange domain › Hairy Orange domain › Hairy Orange domain › Hairy_orange | 0.58 | 44.0 | 4.58e-01 | 79.6% | 88.9% |
| 3783344 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.58 | 49.0 | 4.03e-01 | 100.0% | 83.2% |
| 3452941 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.56 | 45.0 | 4.50e-01 | 91.8% | 92.0% |
| 3998998 | 601.16.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › Focal_AT | 0.53 | 41.0 | 3.11e-01 | 95.9% | 78.4% |
| 5026055 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.51 | 40.0 | 2.61e-01 | 100.0% | 96.7% |
| 3545183 | 148.1.3.364 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF28256 | 0.51 | 35.0 | 2.82e-01 | 73.5% | 45.0% |
D4
medium
residues 276-350