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hypothetical_protein_AP053_gp166

Euk-Vir

Ostreococcus_mediterraneus_virus_1

hypothetical_protein_AP053_gp166__YP_009172926__Ostreococcus_mediterraneus_virus_1__1663210

Identity

Accession:
YP_009172926 ↗
Protein ID:
hypothetical_protein_AP053_gp166
Kingdom:
euk

Quality

82.0 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Prasinovirus› Ostreococcus_mediterraneus_virus_1

TaxID: 1663210

Cluster

View cluster (14 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 109-175
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5kycB02 2.20.210.10 Mainly Beta › Single Sheet › ubp-family deubiquitinating enzyme fold › ubp-family deubiquitinating enzyme superfamily 0.80 60.0 6.65e-01 100.0% 98.1%
6iomB01 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.72 48.0 4.57e-01 100.0% 59.7%
3ihpA03 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.70 63.0 4.00e-01 100.0% 30.4%
7l0jB01 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.65 48.0 4.34e-01 100.0% 58.4%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.63 40.0 4.09e-01 100.0% 66.7%
2pn5A08 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.63 41.0 3.44e-01 98.5% 40.5%
4n0rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 41.0 3.78e-01 100.0% 54.1%
4nn5C02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 39.0 3.44e-01 100.0% 44.4%
1fyhB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 44.0 3.86e-01 100.0% 50.5%
5cadA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 35.0 2.51e-01 100.0% 19.7%
4o9gA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 35.0 2.79e-01 100.0% 28.3%
2dtgE06 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 39.0 3.39e-01 100.0% 46.6%
3jamD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.56 46.0 3.62e-01 100.0% 44.4%
4h3wA02 2.60.120.1260 Mainly Beta › Sandwich › Jelly Rolls › 0.55 44.0 3.33e-01 100.0% 37.5%
2z04B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 39.0 2.88e-01 76.1% 59.1%
5jpnB04 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.55 38.0 3.13e-01 98.5% 40.5%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.53 38.0 3.44e-01 100.0% 55.4%
1w99A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 48.0 3.40e-01 100.0% 35.6%
1n26A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 36.0 3.16e-01 100.0% 45.8%
7bi2A02 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 41.0 3.37e-01 100.0% 45.5%
2xskA00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 39.0 3.53e-01 100.0% 58.9%
4f23A02 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.51 37.0 2.55e-01 97.0% 23.3%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 38.0 3.13e-01 100.0% 42.5%
3q8pB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.51 44.0 3.80e-01 100.0% 60.2%
1we8A01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.51 31.0 2.92e-01 83.6% 46.4%
4h32A02 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.51 37.0 2.56e-01 97.0% 23.6%
2fiaB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 35.0 2.70e-01 100.0% 30.8%
4harA00 3.10.50.50 Alpha Beta › Roll › Chitinase A; domain 3 › Rubella virus capsid protein 0.51 45.0 3.93e-01 97.0% 95.9%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.50 34.0 3.72e-01 100.0% 98.0%
1r9fA01 3.30.390.180 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 0.50 42.0 3.61e-01 100.0% 56.9%
2htiA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 38.0 3.12e-01 100.0% 42.9%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3593723 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.83 77.0 4.65e-01 100.0% 28.2%
3701268 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.82 75.0 4.61e-01 100.0% 26.5%
3489525 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.81 74.0 4.97e-01 100.0% 31.7%
3783065 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.80 73.0 4.52e-01 100.0% 21.3%
4029285 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.79 72.0 4.39e-01 100.0% 20.8%
3274671 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.78 71.0 4.38e-01 100.0% 26.8%
4318640 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.78 71.0 4.36e-01 100.0% 18.2%
3743825 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.78 72.0 4.53e-01 100.0% 21.6%
3593128 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.78 70.0 4.36e-01 100.0% 18.9%
3797595 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.78 70.0 4.43e-01 100.0% 23.1%
3618846 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.77 70.0 4.37e-01 100.0% 19.7%
3622020 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.77 69.0 4.41e-01 100.0% 23.4%
4017540 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.77 70.0 4.41e-01 100.0% 20.3%
3402652 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.76 69.0 4.31e-01 100.0% 21.1%
4029890 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.76 68.0 4.32e-01 100.0% 22.2%
3271978 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.76 69.0 4.35e-01 100.0% 21.8%
3236879 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.74 67.0 4.15e-01 100.0% 18.6%
3237004 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.74 66.0 4.12e-01 100.0% 18.4%
None — 0.74 66.0 4.11e-01 100.0% 27.7%
None — 0.74 66.0 3.99e-01 100.0% 16.2%
3600084 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.74 67.0 4.33e-01 100.0% 27.4%
3800929 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.72 65.0 3.99e-01 100.0% 21.7%
3226036 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.72 64.0 4.00e-01 100.0% 23.1%
3940432 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.72 64.0 3.89e-01 100.0% 20.0%
4375667 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.71 64.0 3.89e-01 100.0% 23.2%
3918990 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.71 64.0 3.57e-01 100.0% 8.9%
5038654 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 49.0 4.57e-01 100.0% 62.5%
3738083 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.66 59.0 3.31e-01 100.0% 9.7%
3021684 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.63 41.0 3.98e-01 100.0% 60.3%
3239669 10.4.1.19 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › Glycoprotein 0.62 40.0 3.39e-01 100.0% 41.9%
3860932 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.60 45.0 3.83e-01 100.0% 50.5%
3884006 11.1.1.1013 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26755 0.59 42.0 3.88e-01 100.0% 58.8%
3515097 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.59 37.0 3.20e-01 100.0% 40.0%
3801207 219.1.1.50 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH_1 0.59 50.0 3.08e-01 100.0% 16.6%
3239591 382.1.1.20 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › PF29036 0.59 52.0 4.60e-01 100.0% 85.0%
3929943 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.56 50.0 4.57e-01 100.0% 81.1%
4020546 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.56 46.0 3.68e-01 100.0% 46.2%
3882078 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.55 44.0 3.47e-01 100.0% 43.0%
3221358 382.1.1.20 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › PF29036 0.55 49.0 4.27e-01 100.0% 85.0%
3962625 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.54 41.0 3.76e-01 100.0% 61.1%
3371543 109.4.1.1599 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase 0.53 32.0 2.08e-01 97.0% 14.3%
157233 10.32.1.18 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Endotoxin_C 0.53 48.0 3.50e-01 100.0% 39.8%
3990294 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.52 47.0 4.44e-01 100.0% 85.0%
3760983 3335.1.1.3 ↗ beta barrels › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › KCTD18_C 0.52 47.0 4.09e-01 100.0% 98.0%
3300479 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.52 39.0 3.31e-01 100.0% 47.8%
3830978 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.51 40.0 3.30e-01 100.0% 47.5%
4271892 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.50 44.0 3.58e-01 100.0% 52.0%
3967141 327.16.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin 0.50 43.0 2.92e-01 100.0% 80.0%
D2 medium residues 1-108
PDB
Domain cluster: rep: hypothetical_protein_PBCV1_A105L__NP_048453__Paramecium_bursaria_Chlorella_virus_1__10506__D3-109
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00443.36 best UCH 52.4 8.00e-14 97.2% 41.7%
D3 medium residues 185-259
PDB
Domain cluster: rep: hypothetical_protein_OLNG_00095__YP_007674737__Ostreococcus_lucimarinus_virus_OlV5__754064__D176-265
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00443.36 best UCH 39.2 9.00e-10 88.0% 24.0%