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hypothetical_protein_AP053_gp219

Euk-Vir

Ostreococcus_mediterraneus_virus_1

hypothetical_protein_AP053_gp219__YP_009172975__Ostreococcus_mediterraneus_virus_1__1663210

Identity

Accession:
YP_009172975 ↗
Protein ID:
hypothetical_protein_AP053_gp219
Kingdom:
euk

Quality

37.7 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Prasinovirus› Ostreococcus_mediterraneus_virus_1

TaxID: 1663210

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 277-327
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ds1A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 52.0 4.31e-01 96.1% 50.0%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 45.0 3.67e-01 98.0% 38.5%
3cgbA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.59 44.0 3.45e-01 100.0% 38.2%
1gmeA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 44.0 3.37e-01 98.0% 32.0%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 45.0 3.66e-01 100.0% 43.6%
5tjjB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.56 41.0 2.96e-01 100.0% 24.2%
5gqoA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 38.0 3.18e-01 100.0% 37.1%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 42.0 3.30e-01 100.0% 34.9%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 43.0 3.58e-01 98.0% 45.5%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 43.0 3.61e-01 98.0% 48.4%
6pfzD02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 41.0 2.61e-01 100.0% 16.3%
2vw9B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 43.0 3.53e-01 98.0% 50.5%
2kqfA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.53 44.0 3.70e-01 100.0% 55.2%
1szlA01 2.20.100.10 Mainly Beta › Single Sheet › TSP-1 type 1 repeat › Thrombospondin type-1 (TSP1) repeat 0.52 39.0 3.92e-01 100.0% 88.5%
2l7eA00 2.60.40.1970 Mainly Beta › Sandwich › Immunoglobulin-like › YEATS domain 0.50 39.0 3.20e-01 100.0% 82.1%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3226890 922.1.1.5 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_spondin 0.75 61.0 6.24e-01 100.0% 92.0%
4233592 922.1.1.0 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.75 57.0 5.79e-01 98.0% 86.0%
3565166 922.1.1.5 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_spondin 0.73 59.0 3.92e-01 100.0% 22.1%
3878727 922.1.1.5 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_spondin 0.73 59.0 5.52e-01 100.0% 72.3%
3858016 922.1.1.27 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_spondin, TSP1_ADAMTS 0.73 59.0 4.50e-01 100.0% 37.6%
3760912 922.1.1.1 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.72 56.0 5.64e-01 100.0% 88.0%
3915731 922.1.1.5 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_spondin 0.72 62.0 4.49e-01 100.0% 35.3%
3544631 922.1.1.5 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_spondin 0.71 61.0 5.81e-01 100.0% 83.3%
3904376 922.1.1.5 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_spondin 0.71 61.0 5.97e-01 100.0% 92.7%
3907093 922.1.1.0 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.71 54.0 5.37e-01 100.0% 80.0%
3561045 922.1.1.5 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_spondin 0.70 61.0 5.68e-01 100.0% 81.5%
3556589 922.1.1.1 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.70 55.0 4.36e-01 100.0% 40.7%
3769622 922.1.1.35 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1, TSP1_spondin, TSP1_ADAMTS 0.70 60.0 3.88e-01 100.0% 21.7%
3904363 922.1.1.27 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_spondin, TSP1_ADAMTS 0.69 60.0 4.46e-01 100.0% 37.8%
3933796 922.1.1.0 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.68 50.0 5.06e-01 100.0% 82.0%
3580595 922.1.1.0 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.68 52.0 5.26e-01 100.0% 84.0%
3912815 922.1.1.0 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.66 56.0 5.55e-01 100.0% 92.7%
3858018 922.1.1.5 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_spondin 0.66 57.0 4.24e-01 100.0% 37.8%
3849861 922.1.1.0 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.66 50.0 5.10e-01 100.0% 90.0%
3888231 922.1.1.1 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.66 50.0 5.08e-01 100.0% 90.0%
3904378 922.1.1.5 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_spondin 0.65 53.0 5.24e-01 100.0% 90.9%
3913930 922.1.1.5 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_spondin 0.64 49.0 4.84e-01 100.0% 81.8%
3234678 922.1.1.4 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › CFP_C_TSP1 0.64 49.0 4.96e-01 100.0% 90.0%
3932870 922.1.1.1 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.63 52.0 5.08e-01 100.0% 83.6%
3931528 922.1.1.0 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.62 50.0 4.96e-01 100.0% 87.3%
3500517 922.1.1.1 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.61 47.0 4.82e-01 100.0% 89.6%
3239695 922.1.1.1 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.61 49.0 4.87e-01 100.0% 85.5%
4577892 922.1.1.1 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.61 48.0 4.93e-01 100.0% 91.8%
3241129 922.1.1.5 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_spondin 0.59 48.0 4.75e-01 100.0% 87.3%
2526666 922.1.1.1 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.59 51.0 4.64e-01 100.0% 74.3%
3169657 4099.1.1.47 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF30282 0.59 46.0 3.68e-01 92.2% 60.9%
3713700 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.58 48.0 3.44e-01 100.0% 41.8%
3396100 922.1.1.1 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.57 48.0 4.65e-01 100.0% 95.0%
317 2.1.1.122 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.57 45.0 3.66e-01 100.0% 43.6%
3490291 922.1.1.1 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 0.56 46.0 4.63e-01 100.0% 92.0%
3738365 2.1.1.128 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Arb1 0.56 43.0 3.33e-01 100.0% 35.4%
3620144 922.1.1.7 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_ADAMTS 0.55 46.0 4.42e-01 100.0% 98.3%
3621948 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.55 46.0 3.34e-01 100.0% 36.1%
3512104 922.1.1.9 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_2 0.54 45.0 4.39e-01 100.0% 87.3%
3529346 922.1.1.0 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.53 44.0 4.25e-01 100.0% 90.0%
3392484 922.1.1.9 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_2 0.53 44.0 4.50e-01 100.0% 100.0%
4002300 922.1.1.7 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_ADAMTS 0.53 44.0 4.14e-01 100.0% 92.3%
4264144 2.1.1.122 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.52 41.0 3.43e-01 100.0% 46.7%
3701262 2.1.1.225 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30388 0.51 44.0 3.36e-01 100.0% 41.5%
3667413 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 38.0 3.44e-01 100.0% 58.7%
3173021 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.50 43.0 3.08e-01 100.0% 31.5%
D2 medium residues 512-602
PDB