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hypothetical_protein_AP054_gp068

Euk-Vir

Ostreococcus_lucimarinus_virus_7

hypothetical_protein_AP054_gp068__YP_009173080__Ostreococcus_lucimarinus_virus_7__1663209

Identity

Accession:
YP_009173080 ↗
Protein ID:
hypothetical_protein_AP054_gp068
Kingdom:
euk

Quality

58.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 499-613
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gudA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 56.0 5.53e-01 100.0% 96.6%
3gw6D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 54.0 4.78e-01 100.0% 83.2%
4f3lA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 26.0 2.57e-01 79.1% 42.5%
3zqmA00 6.10.140.2160 Special › Helix non-globular › Helix Hairpins › 0.51 25.0 3.21e-01 89.6% 86.4%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3275547 3240.1.1.1 alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 0.67 55.0 5.67e-01 94.8% 89.1%
382463 3240.1.1.1 alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 0.60 55.0 5.49e-01 100.0% 95.8%
1509442 3240.1.1.1 alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 0.57 53.0 4.79e-01 100.0% 90.7%
3561252 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.56 21.0 3.19e-01 83.5% 90.0%
4007581 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 24.0 3.36e-01 80.9% 90.0%
3903397 102.1.1.124 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › CABIT 0.52 26.0 2.97e-01 77.4% 62.5%
4611946 3281.1.1.4 alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Proton_antipo_N,NADH5_C 0.51 36.0 2.33e-01 73.0% 47.7%
D3 medium residues 631-657_686-736
PDB
D4 medium residues 760-789_810-854
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5d4nC00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 40.0 3.69e-01 74.7% 93.9%
2cz4A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 38.0 3.55e-01 76.0% 96.0%
3oc2A01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.54 40.0 3.17e-01 82.7% 55.5%
1g4mA01 2.60.40.840 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 39.0 3.11e-01 81.3% 63.2%
1lfpA03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.51 35.0 3.59e-01 73.3% 100.0%
1dfaA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.50 37.0 2.75e-01 78.7% 89.1%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5078458 2004.1.1.94 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP_bind_1 0.54 45.0 3.25e-01 93.3% 37.3%
3306468 868.1.1.1 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.51 42.0 3.31e-01 94.7% 58.9%