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hypothetical_protein_AP054_gp068
Euk-VirOstreococcus_lucimarinus_virus_7
hypothetical_protein_AP054_gp068__YP_009173080__Ostreococcus_lucimarinus_virus_7__1663209
Identity
- Accession:
- YP_009173080 ↗
- Protein ID:
- hypothetical_protein_AP054_gp068
- Kingdom:
- euk
Quality
58.7
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Algavirales›
Phycodnaviridae›
Prasinovirus›
Ostreococcus_lucimarinus_virus_7
TaxID: 1663209
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 499-613
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gudA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 56.0 | 5.53e-01 | 100.0% | 96.6% |
| 3gw6D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 54.0 | 4.78e-01 | 100.0% | 83.2% |
| 4f3lA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 26.0 | 2.57e-01 | 79.1% | 42.5% |
| 3zqmA00 | 6.10.140.2160 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 25.0 | 3.21e-01 | 89.6% | 86.4% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3275547 | 3240.1.1.1 ↗ | alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 | 0.67 | 55.0 | 5.67e-01 | 94.8% | 89.1% |
| 382463 | 3240.1.1.1 ↗ | alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 | 0.60 | 55.0 | 5.49e-01 | 100.0% | 95.8% |
| 1509442 | 3240.1.1.1 ↗ | alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 | 0.57 | 53.0 | 4.79e-01 | 100.0% | 90.7% |
| 3561252 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.56 | 21.0 | 3.19e-01 | 83.5% | 90.0% |
| 4007581 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 24.0 | 3.36e-01 | 80.9% | 90.0% |
| 3903397 | 102.1.1.124 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › CABIT | 0.52 | 26.0 | 2.97e-01 | 77.4% | 62.5% |
| 4611946 | 3281.1.1.4 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Proton_antipo_N,NADH5_C | 0.51 | 36.0 | 2.33e-01 | 73.0% | 47.7% |
D2
medium
residues 338-498
D3
medium
residues 631-657_686-736
D4
medium
residues 760-789_810-854
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5d4nC00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 40.0 | 3.69e-01 | 74.7% | 93.9% |
| 2cz4A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 38.0 | 3.55e-01 | 76.0% | 96.0% |
| 3oc2A01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.54 | 40.0 | 3.17e-01 | 82.7% | 55.5% |
| 1g4mA01 | 2.60.40.840 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 39.0 | 3.11e-01 | 81.3% | 63.2% |
| 1lfpA03 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.51 | 35.0 | 3.59e-01 | 73.3% | 100.0% |
| 1dfaA01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.50 | 37.0 | 2.75e-01 | 78.7% | 89.1% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5078458 | 2004.1.1.94 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP_bind_1 | 0.54 | 45.0 | 3.25e-01 | 93.3% | 37.3% |
| 3306468 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.51 | 42.0 | 3.31e-01 | 94.7% | 58.9% |