←Back to structures

hypothetical_protein_AP054_gp079

Euk-Vir

Ostreococcus_lucimarinus_virus_7

hypothetical_protein_AP054_gp079__YP_009173091__Ostreococcus_lucimarinus_virus_7__1663209

Identity

Accession:: YP_009173091 ↗
Protein ID:: hypothetical_protein_AP054_gp079
Kingdom:: euk

Quality

71.2 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Prasinovirus› Ostreococcus_lucimarinus_virus_7

TaxID: 1663209

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 125-196

PDB

Domain cluster: representative

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3v1vA00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.74	63.0	4.05e-01	91.7%	72.2%
6lccA01	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.71	60.0	3.80e-01	91.7%	77.3%
3h11A00	3.40.50.1460	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.68	49.0	3.46e-01	75.0%	32.1%
2p0tA02	1.10.60.30	Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains	0.65	34.0	3.44e-01	90.3%	50.0%
4dmvA01	1.20.58.1190	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.64	45.0	4.28e-01	77.8%	62.4%
2lhrA00	1.20.58.1270	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.60	38.0	3.78e-01	83.3%	60.3%
1w9cA00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.59	42.0	2.67e-01	73.6%	17.4%
2e6oA00	1.10.30.10	Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain	0.59	40.0	3.82e-01	72.2%	96.6%
1oruA00	2.40.33.20	Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like	0.52	39.0	2.99e-01	81.9%	72.9%
3fghA00	1.10.30.10	Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain	0.51	40.0	4.21e-01	94.4%	91.0%
4g6dB02	6.10.140.1800	Special › Helix non-globular › Helix Hairpins ›	0.51	40.0	3.88e-01	88.9%	92.6%

ECOD (20)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3848799	3755.2.1.4 ↗	alpha bundles › YscO-like › Flagellar FliJ protein › Flagellar FliJ protein › PF26143	0.93	76.0	5.93e-01	84.7%	45.2%
5080036	4070.1.1.2 ↗	alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50	0.85	63.0	4.37e-01	77.8%	29.8%
3579091	103.15.1.1 ↗	alpha arrays › RuvA-C › Mitoribosomal protein mS23 › Mitoribosomal protein mS23 › MRP-S23	0.80	63.0	4.97e-01	81.9%	46.3%
3391956	6103.1.1.1 ↗	alpha bundles › Death domain-associated protein 6 histone binding domain › Death domain-associated protein 6 histone binding domain › Death domain-associated protein 6 histone binding domain › DAXX_hist_bd	0.78	62.0	4.50e-01	84.7%	33.7%
3799156	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.78	53.0	5.31e-01	70.8%	74.3%
5070097	4070.1.1.2 ↗	alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50	0.77	66.0	4.45e-01	91.7%	73.7%
4034454	191.1.1.0 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain	0.76	62.0	5.08e-01	88.9%	49.6%
3283939	3781.2.1.0 ↗	a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › ssDNA-binding protein ThermoDBP-related › ssDNA-binding protein ThermoDBP-related	0.74	59.0	4.67e-01	88.9%	43.4%
4091240	131.1.1.37 ↗	alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD, HDOD, HD_assoc	0.73	65.0	3.93e-01	93.1%	31.5%
3444845	4106.1.1.1 ↗	few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC	0.72	55.0	4.04e-01	81.9%	38.4%
4929712	140.1.1.11 ↗	alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1	0.70	58.0	4.05e-01	88.9%	39.1%
3589064	5076.2.1.0 ↗	alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ	0.66	52.0	3.72e-01	84.7%	34.4%
3251314	109.4.1.1206 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › F-box-like	0.66	46.0	3.17e-01	75.0%	22.1%
3443494	7015.1.1.1 ↗	alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC	0.66	57.0	4.14e-01	93.1%	58.9%
2814929	150.1.1.14 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › EncFtn-like	0.64	47.0	4.90e-01	81.9%	82.4%
4406265	2004.1.1.71 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IPPT	0.64	52.0	3.60e-01	88.9%	89.2%
3272337	3922.1.1.64 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Sin3_corepress	0.62	49.0	4.22e-01	86.1%	89.6%
3841203	109.6.1.2 ↗	alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF,RasGEF_N	0.57	49.0	2.97e-01	95.8%	41.7%
4979418	5060.2.1.0 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain	0.56	50.0	4.24e-01	97.2%	99.1%
3793382	101.1.10.0 ↗	alpha arrays › HTH › HTH › Cyclin-like	0.52	43.0	3.86e-01	91.7%	84.0%

D2 medium residues 15-83

PDB

Domain cluster: rep: hypothetical_protein_BST79_gp244__YP_009325762__Only_Syngen_Nebraska_virus_5__1917232__D24-92

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF19150.6 best	DUF5832	65.5	5.90e-18	72.5%	63.0%