←Back to structures
hypothetical_protein_AP054_gp083
Euk-VirOstreococcus_lucimarinus_virus_7
hypothetical_protein_AP054_gp083__YP_009173095__Ostreococcus_lucimarinus_virus_7__1663209
Identity
- Accession:
- YP_009173095 ↗
- Protein ID:
- hypothetical_protein_AP054_gp083
- Kingdom:
- euk
Quality
88.1
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Algavirales›
Phycodnaviridae›
Prasinovirus›
Ostreococcus_lucimarinus_virus_7
TaxID: 1663209
Cluster
View cluster (229 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-126_182-218
Domain cluster:
rep: IMGVR_UViG_3300009616_000257-3300009616-Ga0116111_100275611__D486-632
Pfam (8)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03291.23 best | mRNA_G-N7_MeTrfase | 53.2 | 3.60e-14 | 87.6% | 46.7% |
| PF13489.13 | Methyltransf_23 | 32.4 | 1.00e-07 | 87.0% | 58.5% |
| PF01209.25 | Ubie_methyltran | 24.4 | 2.40e-05 | 87.0% | 50.2% |
| PF05175.21 | MTS | 34.7 | 1.80e-08 | 82.0% | 71.0% |
| PF13847.13 | Methyltransf_31 | 44.5 | 2.00e-11 | 72.0% | 70.7% |
| PF08241.19 | Methyltransf_11 | 49.2 | 9.40e-13 | 60.9% | 99.0% |
| PF08242.19 | Methyltransf_12 | 51.0 | 2.90e-13 | 59.6% | 100.0% |
| PF13649.13 | Methyltransf_25 | 56.0 | 7.50e-15 | 59.0% | 100.0% |
D2
high
residues 129-178
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ltxR02 | 3.30.519.10 | Alpha Beta › 2-Layer Sandwich › Guanine Nucleotide Dissociation Inhibitor; domain 2 › Guanine Nucleotide Dissociation Inhibitor, domain 2 | 0.62 | 46.0 | 3.24e-01 | 84.0% | 41.0% |
| 4q3kB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.62 | 43.0 | 2.81e-01 | 76.0% | 29.8% |
| 1icwB00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.61 | 39.0 | 3.58e-01 | 74.0% | 48.5% |
| 3a0rA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.61 | 43.0 | 3.46e-01 | 76.0% | 82.1% |
| 3fz2A00 | 3.30.70.1700 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U | 0.60 | 49.0 | 3.80e-01 | 100.0% | 96.1% |
| 2xr1A03 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.59 | 50.0 | 3.23e-01 | 100.0% | 42.3% |
| 2y8tA03 | 2.10.70.70 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.59 | 38.0 | 3.77e-01 | 76.0% | 60.0% |
| 3po3S02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.58 | 43.0 | 3.84e-01 | 82.0% | 63.5% |
| 3akoC00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.58 | 40.0 | 2.96e-01 | 76.0% | 60.4% |
| 2x45A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.57 | 48.0 | 3.56e-01 | 98.0% | 42.4% |
| 3p9vA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 42.0 | 3.13e-01 | 86.0% | 51.3% |
| 1x6cA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.56 | 45.0 | 3.45e-01 | 90.0% | 51.7% |
| 2fkcA01 | 3.40.1350.40 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.56 | 48.0 | 3.79e-01 | 100.0% | 56.4% |
| 2kz0A01 | 3.30.300.90 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like | 0.56 | 42.0 | 3.85e-01 | 88.0% | 97.2% |
| 3g1pA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.55 | 47.0 | 3.07e-01 | 100.0% | 36.1% |
| 2yz0A00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.55 | 47.0 | 3.46e-01 | 100.0% | 35.5% |
| 2k3dA00 | 3.10.450.130 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › folded 79 residue fragment of lin0334 like domains | 0.55 | 37.0 | 3.24e-01 | 92.0% | 41.4% |
| 1x49A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 43.0 | 3.97e-01 | 100.0% | 65.7% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 43.0 | 4.08e-01 | 100.0% | 72.3% |
| 1zkpC00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.54 | 44.0 | 2.95e-01 | 100.0% | 39.2% |
| 3k4zA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 42.0 | 3.19e-01 | 100.0% | 91.4% |
| 1qypA00 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.53 | 41.0 | 3.94e-01 | 84.0% | 80.7% |
| 5jv4A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 41.0 | 3.20e-01 | 100.0% | 94.4% |
| 1z5bB03 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.52 | 42.0 | 3.16e-01 | 100.0% | 65.1% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.50 | 36.0 | 3.64e-01 | 80.0% | 93.8% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3575222 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.62 | 43.0 | 4.09e-01 | 76.0% | 61.7% |
| 3591340 | 206.1.1.10 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase | 0.61 | 50.0 | 2.90e-01 | 92.0% | 14.3% |
| 3698931 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.61 | 46.0 | 3.52e-01 | 86.0% | 37.7% |
| 3684267 | 5.1.10.15 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › RPE65 | 0.60 | 44.0 | 3.31e-01 | 86.0% | 30.8% |
| 3727046 | 247.1.1.9 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › DRMBL | 0.59 | 50.0 | 3.18e-01 | 100.0% | 33.8% |
| 5040652 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.59 | 40.0 | 2.71e-01 | 78.0% | 18.3% |
| 4963635 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.59 | 45.0 | 4.05e-01 | 84.0% | 68.1% |
| 5038934 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.59 | 44.0 | 4.29e-01 | 84.0% | 81.0% |
| 3804890 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.59 | 45.0 | 4.26e-01 | 84.0% | 78.0% |
| 3951732 | 316.1.1.18 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii | 0.58 | 49.0 | 3.11e-01 | 100.0% | 19.3% |
| 3816604 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.57 | 43.0 | 3.98e-01 | 82.0% | 72.3% |
| 3263635 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 43.0 | 3.98e-01 | 84.0% | 75.4% |
| 3196550 | 1075.4.1.2 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane_2 | 0.56 | 43.0 | 2.58e-01 | 90.0% | 38.6% |
| 3621358 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.56 | 42.0 | 3.93e-01 | 84.0% | 73.8% |
| 5048721 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.55 | 42.0 | 3.89e-01 | 84.0% | 72.3% |
| 3740252 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.55 | 42.0 | 3.34e-01 | 88.0% | 40.0% |
| 3417430 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.55 | 40.0 | 3.35e-01 | 86.0% | 44.8% |
| 4944916 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.55 | 46.0 | 3.25e-01 | 100.0% | 87.1% |
| 3959235 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.54 | 38.0 | 2.50e-01 | 78.0% | 96.6% |
| 5054449 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.54 | 40.0 | 3.71e-01 | 84.0% | 68.1% |
| 5044391 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 39.0 | 3.91e-01 | 96.0% | 82.0% |
| 4421418 | 330.1.1.3 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer | 0.52 | 41.0 | 3.37e-01 | 100.0% | 47.8% |
| 4957925 | 7579.1.1.36 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 | 0.51 | 35.0 | 2.23e-01 | 74.0% | 21.7% |
| 3440495 | 292.1.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP | 0.51 | 37.0 | 2.46e-01 | 88.0% | 17.4% |
| 5063162 | 3281.1.1.1 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M | 0.50 | 40.0 | 2.40e-01 | 100.0% | 27.1% |