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hypothetical_protein_AP054_gp118

Euk-Vir

Ostreococcus_lucimarinus_virus_7

hypothetical_protein_AP054_gp118__YP_009173130__Ostreococcus_lucimarinus_virus_7__1663209

Identity

Accession:
YP_009173130 ↗
Protein ID:
hypothetical_protein_AP054_gp118
Kingdom:
euk

Quality

83.8 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Prasinovirus› Ostreococcus_lucimarinus_virus_7

TaxID: 1663209

Cluster

View cluster (111 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-96
PDB
Domain cluster: rep: MH700630.1__AXP07733.1__SmphiM6_42__00041__D5-97
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00462.31 best Glutaredoxin 31.9 1.80e-07 76.0% 100.0%
D2 medium residues 144-222
PDB
Domain cluster: rep: OQ436456.1__WEU67403.1__X__00136__D1-82
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00268.28 best Ribonuc_red_sm 75.6 6.10e-21 100.0% 28.1%
D3 medium residues 223-313
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00268.28 best Ribonuc_red_sm 115.8 3.50e-33 100.0% 31.3%
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1h0oA00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.97 93.0 6.24e-01 100.0% 31.6%
4bmoA00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.91 86.0 5.81e-01 100.0% 35.9%
3vkgA12 1.10.287.2610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.86 60.0 4.37e-01 71.4% 31.2%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.83 55.0 6.47e-01 70.3% 96.9%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.82 59.0 5.97e-01 74.7% 88.9%
1dpsA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.81 61.0 4.94e-01 86.8% 44.7%
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.81 57.0 6.55e-01 72.5% 100.0%
2p4vA01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.80 57.0 6.17e-01 73.6% 89.5%
2rkhA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.79 56.0 6.14e-01 73.6% 89.5%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.78 54.0 5.29e-01 71.4% 70.4%
2qqyA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.77 62.0 5.32e-01 84.6% 91.3%
4a5dB00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.77 74.0 5.24e-01 100.0% 56.0%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.77 53.0 5.41e-01 71.4% 96.6%
4iggB02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.76 52.0 4.75e-01 70.3% 52.9%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 52.0 5.68e-01 70.3% 95.9%
5ux1D00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.76 68.0 5.20e-01 100.0% 44.7%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.75 51.0 5.81e-01 70.3% 97.1%
2lw1A00 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.74 53.0 5.51e-01 74.7% 82.4%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 52.0 5.76e-01 73.6% 97.2%
1k04A02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.73 50.0 4.80e-01 70.3% 66.3%
1evsA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.73 61.0 5.02e-01 91.2% 52.8%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.73 54.0 5.99e-01 86.8% 95.9%
3nymA00 6.10.290.10 Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.73 51.0 4.57e-01 74.7% 53.2%
3r2qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.71 54.0 5.03e-01 81.3% 64.6%
6adqG01 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.71 59.0 4.76e-01 90.1% 54.5%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.71 55.0 5.42e-01 89.0% 76.3%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.71 53.0 4.60e-01 80.2% 64.1%
3ezuA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.71 48.0 3.83e-01 70.3% 35.7%
3pwfA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.71 61.0 5.32e-01 92.3% 93.1%
2f2gA00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.70 63.0 4.78e-01 100.0% 42.8%
2az0B00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.69 48.0 5.29e-01 71.4% 98.6%
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 51.0 5.03e-01 80.2% 87.5%
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 50.0 3.76e-01 81.3% 77.2%
2xzmO02 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.65 47.0 5.28e-01 85.7% 97.1%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 54.0 5.44e-01 91.2% 100.0%
7tzoA01 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.61 47.0 3.81e-01 82.4% 89.1%
1aueB00 1.20.120.150 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › FKBP12-rapamycin binding domain 0.61 42.0 4.18e-01 84.6% 69.1%
2vkzA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.60 41.0 2.97e-01 70.3% 83.2%
1sumB02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.57 49.0 4.52e-01 95.6% 86.4%
1v4aA01 1.10.4050.10 Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE 0.56 41.0 3.90e-01 76.9% 81.7%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
162837 150.1.2.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › Ribonuc_red_sm 0.97 92.0 6.16e-01 100.0% 31.2%
3339157 3755.3.1.370 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF632 0.87 60.0 5.60e-01 71.4% 60.9%
3290879 3922.1.1.155 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DUF4349 0.86 58.0 6.60e-01 71.4% 90.0%
3435096 192.29.1.216 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF632 0.86 59.0 5.35e-01 71.4% 55.8%
4937862 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.85 59.0 5.51e-01 71.4% 70.0%
4345287 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.85 57.0 5.55e-01 72.5% 63.0%
4965632 192.7.1.85 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › DUF4349 0.85 56.0 6.62e-01 70.3% 95.4%
4955780 3939.1.1.387 ↗ alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › DUF4349 0.85 57.0 6.71e-01 71.4% 96.9%
4016635 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.84 60.0 5.84e-01 73.6% 79.0%
4041347 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.84 60.0 5.58e-01 73.6% 71.8%
3256502 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.84 57.0 4.16e-01 70.3% 28.7%
3073109 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.84 58.0 6.41e-01 71.4% 90.5%
4543996 3600.1.1.1 ↗ alpha bundles › uncharacterized protein SYNW0670 › uncharacterized protein SYNW0670 › uncharacterized protein SYNW0670 › YlqD 0.83 57.0 5.43e-01 70.3% 61.0%
4009779 601.4.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › TarH 0.82 62.0 5.38e-01 79.1% 91.1%
3474564 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.82 56.0 5.34e-01 70.3% 62.9%
3221478 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.82 61.0 5.90e-01 76.9% 93.0%
3278037 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.81 58.0 4.41e-01 73.6% 34.4%
4446039 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.81 59.0 6.64e-01 79.1% 97.1%
3987389 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.80 52.0 3.21e-01 71.4% 12.1%
3834594 601.27.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › MW0975(SA0943)-like › MW0975(SA0943)-like › DUF632, DUF630 0.78 61.0 5.05e-01 82.4% 81.3%
3682989 5086.1.1.96 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › DUF632 0.78 58.0 4.88e-01 78.0% 82.1%
4995136 3843.1.1.6 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › MrpF_PhaF 0.77 60.0 5.93e-01 90.1% 78.7%
3375617 192.5.1.30 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › DUF641 0.76 53.0 5.61e-01 72.5% 81.2%
5053066 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.76 57.0 4.11e-01 78.0% 48.5%
4422869 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.76 58.0 5.60e-01 79.1% 89.0%
4219218 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.76 54.0 5.05e-01 73.6% 75.5%
2075294 3712.1.1.1 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Med11 0.75 53.0 5.20e-01 73.6% 70.7%
375927 150.1.1.14 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › EncFtn-like 0.75 59.0 5.93e-01 83.5% 81.5%
4223425 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.75 52.0 5.02e-01 72.5% 65.7%
4165448 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.73 50.0 4.79e-01 70.3% 62.9%
3788988 603.1.1.223 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27584, PF27585 0.73 68.0 4.89e-01 100.0% 90.6%
3965106 605.1.1.4 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.72 50.0 5.43e-01 70.3% 86.7%
3455609 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.72 59.0 5.71e-01 85.7% 85.0%
3660125 3711.1.1.4 ↗ alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › DOG1 0.71 53.0 5.52e-01 79.1% 85.9%
4429835 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.71 54.0 5.24e-01 80.2% 87.0%
3732719 601.1.1.25 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › GIT1_C 0.69 56.0 4.95e-01 89.0% 63.0%
4030256 603.2.1.0 ↗ alpha bundles › STAT-like › STAT › STAT 0.68 53.0 5.30e-01 86.8% 80.0%
4470423 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.68 52.0 4.79e-01 81.3% 80.0%
3180530 3711.1.1.0 ↗ alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein 0.67 53.0 5.04e-01 87.9% 80.0%
3799978 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.66 57.0 5.00e-01 97.8% 83.6%
3617771 4006.1.1.0 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain 0.64 45.0 4.24e-01 73.6% 60.0%
4933204 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.62 50.0 4.73e-01 89.0% 79.1%
3237801 109.4.1.93 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TAF6_C 0.61 55.0 3.90e-01 95.6% 35.2%
D4 medium residues 314-380
PDB
Domain cluster: rep: ORF54__NP_733908__Callitrichine_gammaherpesvirus_3__106331__D213-276
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00268.28 best Ribonuc_red_sm 61.0 1.70e-16 83.6% 20.3%