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hypothetical_protein_AP054_gp189

Euk-Vir

Ostreococcus_lucimarinus_virus_7

hypothetical_protein_AP054_gp189__YP_009173231__Ostreococcus_lucimarinus_virus_7__1663209

Identity

Accession:
YP_009173231 ↗
Protein ID:
hypothetical_protein_AP054_gp189
Kingdom:
euk

Quality

89.3 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Prasinovirus› Ostreococcus_lucimarinus_virus_7

TaxID: 1663209

Cluster

View cluster (39 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 244-383
PDB
Domain cluster: rep: DNA_gyrase_subunit_B__YP_009352802__Kaumoebavirus_Viruses.__X__D311-415
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00204.32 best DNA_gyraseB 55.0 1.00e-14 97.1% 50.0%
D2 high residues 400-535_571-662
PDB
Domain cluster: rep: DNA_topoisomerase_2__YP_009162467__Salmon_gill_poxvirus__1680908__D385-517_553-621_640-664
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF01751.29 best Toprim 30.6 4.30e-07 51.3% 84.4%
PF16898.11 TOPRIM_C 75.5 6.10e-21 42.1% 67.2%
D3 medium residues 30-74_201-236
PDB
Domain cluster: rep: DNA_topoisomerase_II__YP_004063644__Ostreococcus_tauri_virus_2__696472__D23-57_206-238
D4 medium residues 75-200
PDB
Domain cluster: rep: GyrB-like_ATPase_domain_protein__YP_784274__Nile_crocodilepox_virus__1285600__D74-178
D5 medium residues 667-732_757-785
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00521.27 best DNA_topoisoIV 77.0 2.00e-21 71.6% 15.1%
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bjtA05 3.90.199.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase II; domain 5 › Topoisomerase II, domain 5 0.96 93.0 6.50e-01 100.0% 47.8%
2lbfB01 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.68 40.0 4.61e-01 76.8% 81.2%
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 50.0 5.31e-01 76.8% 100.0%
3e1sA01 1.10.10.2220 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.67 48.0 4.81e-01 73.7% 100.0%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 51.0 5.36e-01 84.2% 98.9%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 53.0 5.37e-01 87.4% 94.6%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 48.0 5.28e-01 84.2% 94.9%
3zcoA00 1.10.10.2450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.65 57.0 5.17e-01 96.8% 96.9%
2lsoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 50.0 5.29e-01 82.1% 96.4%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 53.0 5.50e-01 89.5% 95.5%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 46.0 4.87e-01 74.7% 96.3%
2qvoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 52.0 5.48e-01 91.6% 97.7%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 33.0 4.23e-01 71.6% 100.0%
1ka1A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.59 48.0 3.78e-01 92.6% 95.4%
4behA01 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.58 33.0 3.81e-01 74.7% 81.2%
3gz5B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 38.0 4.23e-01 71.6% 91.9%
2g29A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 42.0 3.11e-01 80.0% 84.0%
1nklA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.55 38.0 4.11e-01 81.1% 87.2%
4nmyA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 42.0 3.35e-01 81.1% 95.4%
3lxuX01 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.55 38.0 2.70e-01 73.7% 77.5%
4ociA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 35.0 4.09e-01 78.9% 95.5%
4h9nC00 1.20.58.2170 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 37.0 2.95e-01 74.7% 33.7%
5jxxA02 1.20.1180.10 Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain 0.51 34.0 3.82e-01 78.9% 97.0%
7v7yA01 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.51 36.0 2.64e-01 75.8% 77.9%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1165372 101.1.2.9 ↗ alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV 0.99 86.0 7.35e-01 89.5% 79.0%
4238706 101.1.2.9 ↗ alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV 0.98 95.0 6.33e-01 100.0% 39.0%
3768919 4016.1.1.1 ↗ alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › DNA_topoisoIV 0.98 95.0 6.34e-01 100.0% 39.7%
3594651 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.97 95.0 8.28e-01 100.0% 91.5%
3096548 101.1.2.9 ↗ alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV 0.96 92.0 8.03e-01 100.0% 92.5%
4934296 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 53.0 5.10e-01 72.6% 76.2%
4972388 101.1.2.949 ↗ alpha arrays › HTH › HTH › winged helix domain › PF28863 0.73 43.0 3.33e-01 72.6% 28.4%
4943320 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 53.0 4.91e-01 76.8% 65.0%
5044560 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 59.0 4.42e-01 90.5% 46.1%
3462112 101.1.2.10 ↗ alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.70 49.0 5.22e-01 73.7% 89.4%
5073138 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 55.0 5.18e-01 84.2% 74.8%
4963422 101.1.7.1 ↗ alpha arrays › HTH › HTH › Methylated DNA-protein cysteine methyltransferase-C › DNA_binding_1 0.69 43.0 4.54e-01 76.8% 70.6%
4941699 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 47.0 5.18e-01 70.5% 92.0%
3325314 101.1.2.10 ↗ alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.68 47.0 5.29e-01 71.6% 95.7%
3391140 101.1.2.10 ↗ alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.68 53.0 5.23e-01 84.2% 84.0%
3738343 101.1.1.79 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_ABP1_N 0.66 40.0 4.90e-01 76.8% 96.7%
3643333 101.1.2.10 ↗ alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.66 47.0 4.85e-01 74.7% 80.0%
4971669 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 54.0 4.72e-01 89.5% 61.4%
3230219 101.1.2.10 ↗ alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.66 46.0 4.80e-01 71.6% 89.4%
4979355 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 55.0 5.29e-01 91.6% 80.9%
4009179 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 49.0 5.01e-01 78.9% 86.7%
4014609 101.1.1.79 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_ABP1_N 0.65 42.0 4.89e-01 83.2% 96.9%
5021067 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 54.0 5.24e-01 91.6% 88.6%
3652194 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 43.0 4.39e-01 73.7% 96.8%
3330042 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 40.0 4.59e-01 80.0% 98.5%
4979487 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 54.0 4.77e-01 98.9% 68.6%
4339648 101.1.2.852 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27213 0.61 50.0 5.03e-01 90.5% 96.8%
None — 0.61 50.0 3.22e-01 90.5% 55.7%
4468962 101.1.1.46 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_2 0.60 39.0 4.55e-01 75.8% 96.9%
3520270 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.56 38.0 3.76e-01 71.6% 71.4%
3874981 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.54 43.0 3.15e-01 87.4% 51.3%
3617871 108.1.1.147 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_10 0.54 36.0 3.95e-01 80.0% 86.7%
3716968 2004.1.1.17 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.54 46.0 2.79e-01 100.0% 60.3%
3705225 108.1.1.28 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.53 35.0 3.83e-01 77.9% 85.3%
3510210 108.1.1.99 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.53 34.0 3.53e-01 77.9% 68.9%
4027373 108.1.1.28 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.52 32.0 3.50e-01 70.5% 76.0%
3820942 108.1.1.98 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.51 36.0 3.90e-01 80.0% 92.0%
3818809 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.51 36.0 3.76e-01 73.7% 81.2%
4256263 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.51 35.0 3.85e-01 78.9% 90.7%
3302017 108.1.1.96 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.50 34.0 3.68e-01 78.9% 88.0%
D6 medium residues 863-927
PDB
Domain cluster: rep: IMGVR_UViG_3300007985_000017-3300007985-Ga0100381_100027569__D212-299
D7 medium residues 961-1073
PDB
Domain cluster: rep: MH494197.1__AXC39168.1__X__00456__D116-252
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00521.27 best DNA_topoisoIV 36.6 3.60e-09 99.1% 26.5%