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hypothetical_protein_AP054_gp212

Euk-Vir

Ostreococcus_lucimarinus_virus_7

hypothetical_protein_AP054_gp212__YP_009173208__Ostreococcus_lucimarinus_virus_7__1663209

Identity

Accession:
YP_009173208 ↗
Protein ID:
hypothetical_protein_AP054_gp212
Kingdom:
euk

Quality

75.9 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Prasinovirus› Ostreococcus_lucimarinus_virus_7

TaxID: 1663209

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 70-133
PDB
Domain cluster: rep: putative_DNA_polymerase_X_family_protein__YP_009052122__Aureococcus_anophagefferens_virus__1474867__D1-77
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14716.14 best HHH_8 51.6 1.30e-13 100.0% 87.7%
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6h5hA00 1.10.150.110 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like 0.92 86.0 8.28e-01 100.0% 94.4%
4lzgA01 1.10.150.110 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like 0.91 84.0 7.34e-01 100.0% 72.0%
3b0xA01 1.10.150.110 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like 0.91 85.0 7.55e-01 100.0% 83.9%
4i2aA01 1.10.150.110 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like 0.91 84.0 7.27e-01 100.0% 71.3%
2w9mB01 1.10.150.110 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like 0.90 84.0 7.50e-01 100.0% 81.4%
2kp7A01 1.10.150.110 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like 0.84 76.0 7.26e-01 100.0% 90.5%
1lkoA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.76 62.0 4.64e-01 85.9% 80.7%
3zssA02 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.73 58.0 5.36e-01 89.1% 67.1%
3ezuA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.70 57.0 4.02e-01 85.9% 84.6%
3t6gB00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.69 56.0 4.36e-01 87.5% 57.5%
4w8pA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.68 57.0 4.43e-01 89.1% 59.2%
2ddhA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.68 51.0 4.21e-01 81.2% 66.9%
2b0hA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.67 54.0 4.24e-01 85.9% 60.2%
2lm4A01 1.10.150.250 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Flavinator of succinate dehydrogenase 0.67 57.0 5.13e-01 100.0% 72.8%
1z72A00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.66 58.0 4.02e-01 100.0% 70.8%
2v6eA04 1.10.10.2040 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.66 56.0 5.01e-01 98.4% 78.5%
2vmaA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.65 59.0 4.71e-01 98.4% 54.1%
2fu2A00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.65 58.0 5.44e-01 98.4% 96.2%
3ez0C00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.65 58.0 4.03e-01 100.0% 71.2%
3no6A00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.64 57.0 3.86e-01 100.0% 68.1%
3qqaA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 45.0 3.48e-01 76.6% 66.7%
1kg2A02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.62 51.0 4.39e-01 96.9% 89.3%
6xz3A01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.62 53.0 4.31e-01 93.8% 65.0%
4s3mB02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.61 50.0 4.27e-01 92.2% 90.6%
4unfA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.59 49.0 4.14e-01 96.9% 53.0%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.59 49.0 4.40e-01 100.0% 73.2%
2a5yB01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.56 48.0 4.13e-01 100.0% 80.7%
2zgyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 43.0 3.44e-01 100.0% 40.0%
1j1vA00 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.53 45.0 4.04e-01 100.0% 100.0%
3lerA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 45.0 2.92e-01 100.0% 30.3%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.52 42.0 3.83e-01 89.1% 94.3%
6pwjA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.51 37.0 2.74e-01 76.6% 72.1%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3881197 102.1.1.30 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8 0.95 90.0 7.86e-01 100.0% 75.6%
3344162 102.1.1.30 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8 0.95 90.0 8.22e-01 100.0% 83.7%
4024349 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.93 85.0 8.25e-01 96.9% 92.9%
4927559 102.1.1.30 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8 0.93 88.0 7.70e-01 100.0% 84.4%
4951200 102.1.1.30 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8 0.93 88.0 7.85e-01 100.0% 82.4%
3518470 102.1.1.30 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8 0.93 87.0 7.64e-01 100.0% 75.6%
5072866 102.1.1.30 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8 0.93 88.0 7.82e-01 100.0% 83.5%
3269518 102.1.1.30 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8 0.93 86.0 8.38e-01 100.0% 91.4%
3259835 102.1.1.30 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8 0.92 86.0 7.91e-01 100.0% 86.3%
5071220 102.1.1.30 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8 0.92 85.0 7.96e-01 98.4% 97.3%
1170602 102.1.1.30 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8 0.91 85.0 7.49e-01 100.0% 82.0%
3704918 102.1.1.30 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8 0.91 84.0 7.41e-01 100.0% 75.6%
3927254 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.91 84.0 7.93e-01 100.0% 85.3%
2673030 102.1.1.30 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8 0.91 84.0 7.23e-01 100.0% 72.6%
1711579 102.1.1.30 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8 0.90 84.0 7.44e-01 100.0% 79.5%
4033987 102.1.1.30 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8 0.90 83.0 7.66e-01 100.0% 85.0%
3218928 102.1.1.30 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8 0.90 82.0 7.12e-01 100.0% 67.4%
3619142 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.89 82.0 7.36e-01 100.0% 75.3%
3738833 102.1.1.30 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8 0.87 77.0 7.71e-01 98.4% 100.0%
4014137 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.86 78.0 7.56e-01 100.0% 94.3%
3182632 102.1.1.30 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8 0.85 77.0 7.49e-01 100.0% 94.3%
4945748 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.85 79.0 6.92e-01 100.0% 78.9%
3664249 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.83 72.0 6.73e-01 96.9% 85.0%
3972080 4953.1.1.29 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › DUF1631 0.81 74.0 5.28e-01 100.0% 74.9%
2714049 102.1.1.30 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8 0.81 71.0 6.40e-01 100.0% 76.7%
4943621 150.1.1.204 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › VIT1 0.78 62.0 4.79e-01 84.4% 83.1%
5057227 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.77 62.0 4.78e-01 84.4% 83.1%
3723553 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.77 69.0 6.41e-01 100.0% 92.5%
3529790 601.1.1.57 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Talin_VBS2 0.71 59.0 4.55e-01 87.5% 60.0%
4941521 5069.1.3.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.71 54.0 4.65e-01 79.7% 81.1%
3580983 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.70 44.0 3.55e-01 100.0% 32.8%
3881919 601.1.1.5 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › CAS_C 0.69 56.0 3.90e-01 87.5% 38.5%
3931312 601.1.2.6 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Talin_IBS2B 0.69 58.0 4.61e-01 89.1% 65.0%
3762437 601.1.2.138 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › CAS_C 0.69 56.0 3.90e-01 87.5% 38.9%
3498944 601.1.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin 0.67 56.0 4.14e-01 89.1% 50.3%
5044357 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.64 54.0 3.84e-01 96.9% 70.2%
4605697 516.1.1.1 ↗ alpha arrays › YgfY-like (DUP399, Pfam03937) › YgfY-like (DUP399, Pfam03937) › YgfY-like (DUP399, Pfam03937) › Sdh5 0.63 52.0 4.88e-01 100.0% 74.1%
3396058 3361.1.1.1 ↗ alpha bundles › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › RAC_head 0.63 45.0 4.05e-01 76.6% 71.1%
3714356 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.61 48.0 4.48e-01 90.6% 94.1%
4180013 1128.1.1.8 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › PF29574 0.61 47.0 4.29e-01 87.5% 80.0%
3699903 5069.1.3.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.61 45.0 3.89e-01 79.7% 72.0%
3533312 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.60 48.0 4.52e-01 92.2% 73.1%
3538309 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.60 46.0 4.38e-01 96.9% 70.0%
3275768 601.1.1.7 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Talin_IBS2B 0.56 43.0 3.64e-01 87.5% 69.6%
3623002 1008.1.1.0 ↗ alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain 0.55 47.0 4.07e-01 100.0% 69.5%
3729252 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.53 38.0 3.14e-01 75.0% 97.4%
3249247 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.52 35.0 2.92e-01 70.3% 39.2%
3209172 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.51 36.0 3.33e-01 73.4% 77.6%
5050306 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.51 42.0 4.16e-01 98.4% 95.6%
D2 high residues 145-212
PDB
Domain cluster: rep: putative_DNA_polymerase_X_family_protein__YP_009052122__Aureococcus_anophagefferens_virus__1474867__D1-77
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14716.14 best HHH_8 50.8 2.40e-13 100.0% 93.2%