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hypothetical_protein_APZ24_gp016

Euk-Vir

Ostreococcus_lucimarinus_virus_2

hypothetical_protein_APZ24_gp016__YP_009172507__Ostreococcus_lucimarinus_virus_2__1663208

Identity

Accession:
YP_009172507 ↗
Protein ID:
hypothetical_protein_APZ24_gp016
Kingdom:
euk

Quality

64.1 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Prasinovirus› Ostreococcus_lucimarinus_virus_2

TaxID: 1663208

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-56
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gm8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.73 50.0 4.52e-01 100.0% 51.3%
5fmvA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 52.0 4.57e-01 100.0% 53.6%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.69 48.0 3.40e-01 83.6% 24.0%
1iamA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 53.0 4.35e-01 100.0% 45.1%
1ti2B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 48.0 4.20e-01 100.0% 48.8%
2pn5A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.69 53.0 4.41e-01 100.0% 47.9%
2q1mA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.68 49.0 3.84e-01 98.2% 36.2%
3tp4B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 50.0 4.24e-01 100.0% 47.3%
2wngA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 53.0 4.57e-01 100.0% 55.2%
1zxqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 55.0 4.46e-01 100.0% 47.7%
2vugA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.67 48.0 4.45e-01 100.0% 59.7%
2vsdA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 49.0 4.22e-01 100.0% 48.4%
2j3tD01 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.66 47.0 3.60e-01 76.4% 32.1%
2gy5A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 50.0 4.31e-01 100.0% 51.1%
1ollA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 52.0 4.42e-01 100.0% 51.6%
1yd0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.65 53.0 4.57e-01 100.0% 56.2%
2jfrA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.65 54.0 3.69e-01 100.0% 29.1%
2wshA00 3.40.1440.40 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.65 56.0 4.26e-01 100.0% 47.0%
1yq2A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 57.0 4.46e-01 100.0% 47.0%
7wguB01 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.65 46.0 3.94e-01 100.0% 46.2%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.64 56.0 4.20e-01 100.0% 48.6%
6grqA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 50.0 4.32e-01 100.0% 54.5%
6se8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 56.0 4.53e-01 100.0% 51.9%
3dh1B00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.64 55.0 4.00e-01 100.0% 51.2%
1mg7A01 3.30.70.1000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Switch protein XOL-1, GHMP-like 0.63 53.0 3.84e-01 100.0% 77.1%
3bf4A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 53.0 4.44e-01 98.2% 100.0%
4gb7A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.62 44.0 2.61e-01 74.5% 80.7%
3i7jA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.61 43.0 2.83e-01 76.4% 16.5%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 44.0 3.53e-01 78.2% 39.0%
5x6vF00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 45.0 3.53e-01 78.2% 87.3%
2cspA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 46.0 3.87e-01 100.0% 45.9%
4eskC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 47.0 4.00e-01 100.0% 49.0%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.61 52.0 4.67e-01 100.0% 78.0%
5x6vG00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 44.0 3.38e-01 76.4% 87.9%
2q3xA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.61 47.0 3.56e-01 100.0% 33.8%
2wq4A01 2.60.120.760 Mainly Beta › Sandwich › Jelly Rolls › 0.59 52.0 3.99e-01 100.0% 70.5%
1zczA02 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.59 50.0 3.98e-01 100.0% 54.7%
3ocpB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 36.0 2.74e-01 92.7% 26.6%
3cvzB01 3.30.1490.290 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Low molecular weight S-layer protein, domain 1 0.58 48.0 4.11e-01 100.0% 57.6%
2wqtA00 3.90.850.10 Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain 0.57 49.0 3.16e-01 98.2% 27.1%
2vvfA01 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.56 50.0 3.69e-01 100.0% 54.6%
4ggmX02 3.40.140.80 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › LpxI C-terminal catalytic domain 0.56 41.0 3.19e-01 100.0% 32.0%
3n0aA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 45.0 3.50e-01 100.0% 39.3%
1pgsA02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.55 46.0 3.33e-01 100.0% 69.1%
2a74A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.55 42.0 3.60e-01 100.0% 48.6%
4myjA04 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 37.0 2.93e-01 100.0% 31.8%
3b2dC00 2.60.40.770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 45.0 3.38e-01 100.0% 45.3%
3nuhB02 3.30.300.370 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.50 40.0 3.33e-01 100.0% 97.5%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3668018 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.78 55.0 5.55e-01 100.0% 74.5%
3881786 11.1.1.178 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.77 58.0 4.74e-01 100.0% 45.0%
4186857 4012.1.1.0 ↗ a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase 0.76 53.0 5.82e-01 100.0% 100.0%
4531584 4012.1.1.0 ↗ a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase 0.75 51.0 5.65e-01 100.0% 100.0%
3274281 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.74 47.0 3.50e-01 100.0% 27.7%
4033537 1119.1.1.1 ↗ a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.70 62.0 4.07e-01 100.0% 23.9%
3881565 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.69 58.0 4.59e-01 100.0% 46.4%
3924084 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.69 60.0 4.97e-01 100.0% 100.0%
3756439 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 51.0 3.87e-01 100.0% 32.9%
3407363 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.67 48.0 3.57e-01 76.4% 38.6%
4985746 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 47.0 3.87e-01 78.2% 40.0%
4179371 1119.1.1.1 ↗ a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.66 54.0 3.52e-01 100.0% 20.8%
5003527 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.65 57.0 4.17e-01 100.0% 45.3%
3477628 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 48.0 3.88e-01 100.0% 39.1%
1031012 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.64 55.0 4.10e-01 100.0% 45.6%
5005349 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 49.0 2.91e-01 100.0% 10.1%
4033865 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.63 54.0 4.03e-01 100.0% 46.9%
5008037 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 44.0 3.46e-01 76.4% 38.4%
3213885 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.62 54.0 4.41e-01 100.0% 58.1%
3689809 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.61 44.0 4.70e-01 100.0% 95.6%
3787551 223.2.1.17 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › SLM4 0.61 45.0 3.22e-01 78.2% 26.7%
5052949 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 43.0 3.40e-01 78.2% 38.4%
3838346 589.1.1.19 ↗ alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain › Rotamase_2 0.60 47.0 3.11e-01 85.5% 90.0%
4018561 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.59 41.0 3.17e-01 76.4% 30.3%
1002416 2492.1.1.5 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › AICARFT_IMPCHas 0.59 50.0 3.62e-01 100.0% 39.3%
5001166 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.58 45.0 3.48e-01 100.0% 36.3%
4978609 4019.1.1.0 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins 0.58 41.0 2.95e-01 76.4% 49.4%
3251081 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 43.0 3.19e-01 100.0% 31.7%
3701980 221.7.1.0 ↗ a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 0.55 44.0 3.40e-01 89.1% 96.2%
3599641 11.1.1.703 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_CFAP65__9th 0.53 45.0 3.23e-01 100.0% 42.8%
3299766 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 45.0 3.25e-01 100.0% 86.1%
4928935 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 41.0 3.42e-01 89.1% 73.0%
5048521 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 43.0 3.75e-01 94.5% 89.4%
4926979 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 41.0 3.28e-01 90.9% 63.5%
4929825 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 43.0 3.31e-01 92.7% 59.7%