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hypothetical_protein_APZ24_gp076

Euk-Vir

Ostreococcus_lucimarinus_virus_2

hypothetical_protein_APZ24_gp076__YP_009172567__Ostreococcus_lucimarinus_virus_2__1663208

Identity

Accession:
YP_009172567 ↗
Protein ID:
hypothetical_protein_APZ24_gp076
Kingdom:
euk

Quality

75.0 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Prasinovirus› Ostreococcus_lucimarinus_virus_2

TaxID: 1663208

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 270-369
PDB
Domain cluster: rep: hypothetical_protein_pqer_cds_379__YP_009483070__Pandoravirus_quercus__2107709__D434-526_538-556
D2 high residues 396-481
PDB
Domain cluster: rep: hypothetical_protein_AP054_gp074__YP_009173086__Ostreococcus_lucimarinus_virus_7__1663209__D393-484
D3 medium residues 1-63_164-183
PDB
Domain cluster: rep: putative_D5-ATPase-helicase__YP_009052397__Aureococcus_anophagefferens_virus__1474867__D1-67_179-194_228-243
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 46.0 4.67e-01 85.5% 78.6%
2iboA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 38.0 3.81e-01 71.1% 62.9%
1vk1A02 3.30.1760.10 Alpha Beta › 2-Layer Sandwich › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, domain 2 › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, domain 2 0.58 48.0 4.13e-01 90.4% 84.6%
3mgjA00 3.30.70.2690 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain 0.58 40.0 3.90e-01 73.5% 77.1%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 38.0 3.65e-01 71.1% 71.7%
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 37.0 3.77e-01 71.1% 74.4%
2kdoA03 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 37.0 3.78e-01 81.9% 73.8%
2efpA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.53 36.0 3.51e-01 72.3% 61.2%
1f0nA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 41.0 2.94e-01 90.4% 95.4%
2mgzA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 35.0 3.44e-01 72.3% 71.3%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3566248 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.65 44.0 4.31e-01 72.3% 63.3%
3954020 304.56.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.62 40.0 3.93e-01 81.9% 59.1%
4414821 304.56.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.61 41.0 3.99e-01 81.9% 61.7%
4972520 304.24.1.6 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › SBDS_C 0.60 41.0 4.34e-01 73.5% 80.8%
5074053 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.59 41.0 3.79e-01 71.1% 59.0%
3240547 304.24.1.6 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › SBDS_C 0.58 41.0 4.20e-01 79.5% 76.2%
3401629 4961.1.1.2 ↗ a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpa2_4 0.58 50.0 4.78e-01 97.6% 85.0%
4568770 304.56.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.57 38.0 3.83e-01 81.9% 65.9%
4952123 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.55 38.0 4.23e-01 74.7% 100.0%
4031720 304.56.1.0 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like 0.55 37.0 3.65e-01 83.1% 64.4%
3741311 304.44.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 0.55 38.0 3.46e-01 73.5% 56.7%
11004 5103.1.1.1 ↗ a/b three-layered sandwiches › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 › DUF5603 0.55 47.0 4.49e-01 97.6% 82.0%
3629194 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.55 44.0 2.68e-01 90.4% 54.9%
3613200 304.134.1.0 ↗ a+b two layers › Alpha-beta plaits › MJ1480-like › MJ1480-like 0.54 38.0 3.77e-01 74.7% 76.7%
5032056 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 39.0 3.65e-01 75.9% 75.7%
3964707 2006.1.3.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.53 41.0 3.03e-01 84.3% 86.1%
4182592 304.44.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 0.53 36.0 3.20e-01 72.3% 66.9%
4930471 304.4.1.79 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › MCR_D 0.51 38.0 3.64e-01 80.7% 69.0%
3724634 243.1.1.63 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF6841 0.50 38.0 3.22e-01 80.7% 71.4%
D4 medium residues 64-163_184-241
PDB
Domain cluster: rep: hypothetical_protein_MPVG_00146__YP_007676211__Micromonas_pusilla_virus_12T__755272__D65-167_206-231
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23162.2 best AEP_C962R 28.0 3.30e-06 64.6% 61.6%