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hypothetical_protein_APZ24_gp178

Euk-Vir

Ostreococcus_lucimarinus_virus_2

hypothetical_protein_APZ24_gp178__YP_009172669__Ostreococcus_lucimarinus_virus_2__1663208

Identity

Accession:
YP_009172669 ↗
Protein ID:
hypothetical_protein_APZ24_gp178
Kingdom:
euk

Quality

74.3 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Prasinovirus› Ostreococcus_lucimarinus_virus_2

TaxID: 1663208

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-82
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ihqA01 3.30.450.370 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.62 45.0 3.66e-01 76.8% 62.9%
2gzaA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 45.0 4.08e-01 76.8% 85.2%
2z0lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.60 47.0 3.23e-01 85.4% 41.6%
4bfeC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 37.0 3.41e-01 84.1% 48.1%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 32.0 3.56e-01 100.0% 66.7%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.57 44.0 4.02e-01 84.1% 84.1%
4pqdA00 3.90.570.10 Alpha Beta › Alpha-Beta Complex › Sugar Binding Protein, Amyloid A4 Protein; Chain A › Amyloidogenic glycoprotein, heparin-binding domain 0.56 43.0 3.97e-01 81.7% 93.3%
3tzuA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 42.0 3.72e-01 84.1% 71.7%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.55 42.0 3.30e-01 85.4% 50.8%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 41.0 2.93e-01 84.1% 41.6%
3d31A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 30.0 3.75e-01 76.8% 97.8%
2fn0B00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.53 43.0 2.71e-01 87.8% 76.0%
3otxB01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 38.0 2.62e-01 76.8% 41.2%
2z1cB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 35.0 3.63e-01 97.6% 75.7%
2edgA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 40.0 3.47e-01 84.1% 65.4%
3ii7A00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.51 45.0 3.15e-01 100.0% 83.3%
8b55A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.39e-01 93.9% 81.6%
3asiA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 43.0 3.33e-01 93.9% 70.8%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3706686 4263.2.1.0 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.62 40.0 4.37e-01 98.8% 81.5%
None — 0.61 45.0 2.96e-01 76.8% 27.5%
4241499 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.60 54.0 5.04e-01 100.0% 83.5%
302672 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.60 43.0 2.89e-01 76.8% 27.4%
4057937 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.59 45.0 3.91e-01 84.1% 76.9%
4180524 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.55 48.0 3.21e-01 95.1% 54.7%
5056758 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.55 42.0 3.85e-01 85.4% 86.1%
3492423 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 40.0 2.57e-01 81.7% 43.8%
5025215 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.53 45.0 2.93e-01 93.9% 43.6%
None — 0.53 46.0 3.07e-01 95.1% 48.1%
4932458 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 45.0 3.11e-01 95.1% 56.6%
3710974 2004.1.1.307 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Spore_III_AA 0.53 45.0 2.88e-01 95.1% 42.2%
4990771 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.53 45.0 3.02e-01 95.1% 52.9%
3963007 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.51 44.0 2.85e-01 96.3% 46.5%
4956405 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.50 43.0 2.77e-01 93.9% 60.2%
3340130 2004.1.1.307 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Spore_III_AA 0.50 43.0 2.84e-01 95.1% 43.9%