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hypothetical_protein_APZ24_gp235
Euk-VirOstreococcus_lucimarinus_virus_2
hypothetical_protein_APZ24_gp235__YP_009172704__Ostreococcus_lucimarinus_virus_2__1663208
Identity
- Accession:
- YP_009172704 ↗
- Protein ID:
- hypothetical_protein_APZ24_gp235
- Kingdom:
- euk
Quality
82.8
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Algavirales›
Phycodnaviridae›
Prasinovirus›
Ostreococcus_lucimarinus_virus_2
TaxID: 1663208
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-56
Domain cluster:
rep: hypothetical_protein_OLNG_00052__YP_007674696__Ostreococcus_lucimarinus_virus_OlV5__754064__D5-57
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19141.6 best | DUF5824 | 26.4 | 9.40e-06 | 61.5% | 22.1% |
D2
high
residues 64-142
Domain cluster:
rep: LacPavin_0818_WC40_scaffold_15340_prodigal-single.1__X__X__00177__D116-196
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19141.6 best | DUF5824 | 106.6 | 1.50e-30 | 100.0% | 66.9% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1b25A02 | 1.10.569.10 | Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 | 0.70 | 55.0 | 4.22e-01 | 84.8% | 63.5% |
| 1aorA02 | 1.10.569.10 | Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 | 0.66 | 51.0 | 3.95e-01 | 84.8% | 64.0% |
| 4dxwA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.64 | 44.0 | 3.95e-01 | 72.2% | 71.4% |
| 4qicC01 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.59 | 40.0 | 3.49e-01 | 72.2% | 44.8% |
| 1gvfB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.59 | 45.0 | 3.09e-01 | 81.0% | 84.7% |
| 6pw7A02 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.57 | 35.0 | 3.63e-01 | 81.0% | 66.2% |
| 3h87B00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.56 | 44.0 | 3.69e-01 | 84.8% | 89.9% |
| 1td6A03 | 1.10.472.40 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Hypothetical protein mg237 homolog; domain 3 | 0.56 | 42.0 | 4.04e-01 | 81.0% | 77.2% |
| 4du5B00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.54 | 43.0 | 3.02e-01 | 91.1% | 78.0% |
| 4ppuA00 | 1.10.590.10 | Mainly Alpha › Orthogonal Bundle › Chorismate Mutase, subunit A › Chorismate mutase, AroQ class superfamily, eukaryotic | 0.51 | 44.0 | 3.18e-01 | 98.7% | 89.4% |
| 1b0uA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 44.0 | 3.12e-01 | 97.5% | 41.1% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3588334 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.62 | 41.0 | 3.52e-01 | 74.7% | 42.4% |
| 4430025 | 5067.1.1.2 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › SecD_SecF | 0.62 | 48.0 | 3.50e-01 | 84.8% | 59.2% |
| 3324879 | 101.1.1.267 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF26138 | 0.61 | 47.0 | 4.35e-01 | 84.8% | 99.0% |
| 3588371 | 148.1.3.278 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Bac_RepA_C | 0.61 | 45.0 | 3.85e-01 | 81.0% | 49.6% |
| 3380449 | 101.1.10.37 ↗ | alpha arrays › HTH › HTH › Cyclin-like › PF26138 | 0.59 | 44.0 | 3.81e-01 | 82.3% | 98.5% |
| 3823163 | 1075.5.1.5 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Rft-1 | 0.57 | 44.0 | 3.18e-01 | 84.8% | 31.3% |
| 3587991 | 2002.1.1.50 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › F_bP_aldolase | 0.57 | 43.0 | 2.97e-01 | 82.3% | 83.7% |
| 3314861 | 101.1.1.267 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF26138 | 0.56 | 42.0 | 3.71e-01 | 81.0% | 78.3% |
| 3320862 | 101.1.4.66 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › PF26138 | 0.56 | 41.0 | 4.17e-01 | 81.0% | 81.3% |
| 4878251 | 601.7.1.7 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › NTase_sub_bind | 0.53 | 37.0 | 3.10e-01 | 70.9% | 70.7% |
| 3303282 | 101.1.1.267 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF26138 | 0.53 | 44.0 | 4.22e-01 | 97.5% | 92.9% |
| 3452676 | 101.1.1.267 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF26138 | 0.53 | 40.0 | 3.81e-01 | 82.3% | 98.9% |
| 5045440 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.52 | 45.0 | 3.85e-01 | 98.7% | 74.6% |
| 3496703 | 101.1.1.117 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CHDCT2 | 0.50 | 42.0 | 3.16e-01 | 97.5% | 45.0% |