←Back to structures

hypothetical_protein_APZ24_gp254

Euk-Vir

Ostreococcus_lucimarinus_virus_2

hypothetical_protein_APZ24_gp254__YP_009172685__Ostreococcus_lucimarinus_virus_2__1663208

Identity

Accession:
YP_009172685 ↗
Protein ID:
hypothetical_protein_APZ24_gp254
Kingdom:
euk

Quality

76.7 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Prasinovirus› Ostreococcus_lucimarinus_virus_2

TaxID: 1663208

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-130
PDB
Domain cluster: rep: hypothetical_protein_MPVG_00172__YP_007676237__Micromonas_pusilla_virus_12T__755272__D21-126
D2 high residues 180-271
PDB
Domain cluster: rep: hypothetical_protein_AP054_gp232__YP_009173188__Ostreococcus_lucimarinus_virus_7__1663209__D179-270
D3 high residues 281-363
PDB
Domain cluster: rep: hypothetical_protein_MpV1_185c__YP_004062068__Micromonas_sp._RCC1109_virus_MpV1__880161__D297-359
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lkvX02 1.10.220.30 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain 0.68 41.0 3.47e-01 94.0% 37.1%
1ywmA02 1.20.1270.150 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Surface Active Protein 0.66 32.0 3.32e-01 79.5% 50.0%
1yozA00 1.10.3200.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like 0.64 49.0 4.48e-01 81.9% 98.2%
3sqiA01 1.10.150.540 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.60 53.0 5.01e-01 100.0% 91.9%
7mqzA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 43.0 3.26e-01 77.1% 32.5%
6j7xA01 1.25.40.120 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase 0.57 43.0 2.99e-01 80.7% 28.4%
2dfkC01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.57 50.0 3.77e-01 100.0% 88.7%
2z0qA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.56 48.0 3.75e-01 100.0% 87.6%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.55 38.0 3.62e-01 71.1% 89.8%
3k8pC02 1.10.357.150 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.55 50.0 3.81e-01 100.0% 83.2%
3mvpA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 43.0 3.65e-01 86.7% 70.5%
2imgA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 47.0 3.93e-01 100.0% 99.3%
3v5uA02 1.20.1420.30 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › NCX, central ion-binding region 0.53 40.0 3.07e-01 83.1% 82.8%
2osaA00 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.53 44.0 3.41e-01 92.8% 77.6%
3uumA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 37.0 3.29e-01 72.3% 79.5%
3bxjA02 1.10.506.20 Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › 0.53 37.0 3.56e-01 74.7% 89.8%
3q9dB01 1.20.58.1050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 37.0 3.66e-01 75.9% 95.5%
4rg9B01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 42.0 3.38e-01 90.4% 70.7%
4cp8E00 3.90.1300.10 Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain 0.50 42.0 2.72e-01 97.6% 36.9%
4qgpB00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.50 35.0 3.23e-01 72.3% 80.4%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3665946 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.68 50.0 3.15e-01 79.5% 17.4%
3515268 186.2.1.0 ↗ alpha arrays › lambda integrase-N-like › VEFS domain › VEFS domain 0.57 48.0 4.48e-01 92.8% 81.9%
3898216 133.1.1.1 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.57 50.0 3.76e-01 100.0% 99.5%
4108324 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.56 39.0 3.12e-01 72.3% 52.0%
3250823 133.1.1.1 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.55 47.0 3.68e-01 100.0% 93.8%
5050917 601.28.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.53 36.0 3.67e-01 72.3% 71.2%
3539086 109.25.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A 0.52 37.0 3.38e-01 74.7% 78.3%
3478107 3966.1.1.1 ↗ a+b complex topology › Mitoribosomal protein mS22 › Mitoribosomal protein mS22 › Mitoribosomal protein mS22 › MRP-S22 0.52 44.0 3.06e-01 98.8% 96.5%
4959990 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.52 36.0 3.15e-01 72.3% 73.1%
3993438 3552.1.1.0 ↗ alpha arrays › Pfam family PF09836 N-terminal domain › Pfam family PF09836 N-terminal domain › Pfam family PF09836 N-terminal domain 0.51 36.0 3.73e-01 74.7% 100.0%
D4 medium residues 136-169
PDB