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hypothetical_protein_APZ24_gp269

Euk-Vir

Ostreococcus_lucimarinus_virus_2

hypothetical_protein_APZ24_gp269__YP_009172670__Ostreococcus_lucimarinus_virus_2__1663208

Identity

Accession:
YP_009172670 ↗
Protein ID:
hypothetical_protein_APZ24_gp269
Kingdom:
euk

Quality

84.5 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Prasinovirus› Ostreococcus_lucimarinus_virus_2

TaxID: 1663208

Cluster

View cluster (42 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-63
PDB
Domain cluster: rep: hypothetical_protein_OLNG_00081__YP_007674723__Ostreococcus_lucimarinus_virus_OlV5__754064__D2-65
D2 medium residues 68-112_202-248
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1umqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 38.0 4.51e-01 92.4% 78.3%
2id3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 35.0 4.25e-01 92.4% 100.0%
2v5cA03 1.20.58.460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like 0.58 50.0 4.52e-01 97.8% 90.8%
3rrwB01 1.10.520.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › 0.56 45.0 3.66e-01 88.0% 69.2%
5haxA01 1.20.58.1780 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 46.0 3.43e-01 100.0% 90.9%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3545682 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.58 47.0 3.40e-01 92.4% 84.1%
5053707 208.1.1.1 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.56 43.0 3.33e-01 87.0% 45.1%
3959628 1075.1.2.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.52 37.0 3.15e-01 75.0% 84.4%
D3 medium residues 113-201
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01028.26 best Topoisom_I 23.9 3.40e-05 95.5% 21.1%
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m4aA03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.83 75.0 6.76e-01 97.8% 83.1%
1a31A03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.80 69.0 5.75e-01 93.3% 63.3%
2h7fX02 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.76 69.0 4.98e-01 100.0% 38.2%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.74 68.0 5.37e-01 100.0% 56.6%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.69 36.0 4.40e-01 73.0% 77.6%
1a41A01 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.67 57.0 5.00e-01 94.4% 63.8%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 47.0 3.10e-01 82.0% 84.5%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 34.0 3.89e-01 74.2% 78.8%
3so6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 42.0 3.67e-01 78.7% 59.1%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 35.0 3.91e-01 73.0% 78.9%
2eigA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 40.0 2.99e-01 84.3% 28.3%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 29.0 3.52e-01 73.0% 78.6%
3nvqA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 41.0 2.66e-01 79.8% 41.4%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 32.0 3.63e-01 73.0% 74.6%
5t5lA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 38.0 2.85e-01 74.2% 79.0%
1zxzB00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.53 38.0 3.01e-01 74.2% 60.2%
1vpkA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 39.0 3.58e-01 92.1% 58.0%
2uurA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 40.0 3.17e-01 82.0% 96.2%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.53 45.0 3.53e-01 93.3% 62.0%
4dxkA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 40.0 3.61e-01 82.0% 60.0%
5mteA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.52 36.0 3.18e-01 71.9% 79.6%
1dgmA01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 38.0 2.73e-01 77.5% 59.1%
3l8kA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 37.0 3.28e-01 74.2% 57.3%
1lmeA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.52 36.0 3.07e-01 73.0% 68.8%
1o5yA00 3.10.690.10 Alpha Beta › Roll › Bifunctional nuclease domain › Bifunctional nuclease domain 0.52 38.0 3.33e-01 87.6% 49.7%
1lm4A00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.52 36.0 2.86e-01 71.9% 68.4%
1lm0A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 38.0 3.70e-01 84.3% 70.3%
1rl1A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 38.0 3.77e-01 83.1% 76.1%
1rl4B00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.51 36.0 3.02e-01 74.2% 58.3%
1epwA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 39.0 2.96e-01 85.4% 90.6%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.50 39.0 3.40e-01 84.3% 96.4%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3282325 101.1.8.2 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Topoisom_I 0.86 81.0 6.58e-01 100.0% 66.5%
3973159 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.85 78.0 6.45e-01 98.9% 66.7%
177048 101.1.8.2 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Topoisom_I 0.83 75.0 6.20e-01 97.8% 65.3%
5044666 101.1.8.2 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Topoisom_I 0.82 75.0 6.03e-01 97.8% 69.4%
138326 101.1.8.2 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Topoisom_I 0.75 67.0 5.74e-01 97.8% 65.5%
3654790 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 37.0 4.33e-01 79.8% 90.0%
3582308 220.1.1.16 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF1681 0.61 43.0 4.24e-01 74.2% 87.4%
4502878 325.1.7.3 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.60 36.0 4.32e-01 83.1% 90.0%
3719687 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 42.0 4.51e-01 74.2% 85.3%
3744503 2484.8.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) › Peptidase_C50 0.60 41.0 2.86e-01 70.8% 86.0%
3383138 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 40.0 4.23e-01 100.0% 79.5%
3575385 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 42.0 4.10e-01 75.3% 80.0%
2983288 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 41.0 4.16e-01 73.0% 77.5%
3589473 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.58 38.0 3.99e-01 78.7% 73.8%
3607454 220.1.1.306 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_22 0.58 35.0 3.40e-01 76.4% 52.0%
3630687 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 41.0 3.49e-01 74.2% 92.0%
4028996 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 40.0 3.42e-01 71.9% 53.8%
3210707 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 33.0 3.93e-01 70.8% 85.0%
4988246 300.1.1.6 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB 0.57 39.0 3.40e-01 70.8% 91.1%
3514750 220.1.1.52 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.56 40.0 3.80e-01 75.3% 60.9%
3623785 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.56 32.0 3.49e-01 70.8% 66.7%
3482680 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 31.0 3.46e-01 75.3% 69.2%
3412753 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 45.0 2.94e-01 86.5% 36.8%
3255946 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 39.0 4.10e-01 75.3% 92.5%
4489443 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.55 40.0 3.76e-01 76.4% 69.1%
5010537 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.55 39.0 4.15e-01 79.8% 84.8%
3949336 220.1.1.216 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Helicase_IV_N 0.54 37.0 3.51e-01 78.7% 57.3%
4654713 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.54 37.0 3.11e-01 70.8% 95.2%
4606688 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.54 35.0 3.78e-01 73.0% 78.7%
3631298 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 33.0 3.59e-01 74.2% 73.3%
3664617 2.1.1.223 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 0.53 37.0 3.79e-01 87.6% 75.3%
4594302 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.53 34.0 3.12e-01 73.0% 48.7%
4984320 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.52 33.0 2.89e-01 73.0% 42.3%
3892091 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 39.0 3.09e-01 83.1% 37.4%
3525188 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.52 38.0 3.67e-01 79.8% 68.0%
3411042 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.52 33.0 3.86e-01 71.9% 96.7%
3220752 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 36.0 3.47e-01 75.3% 98.2%
3478161 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.51 40.0 3.55e-01 93.3% 57.0%
3689390 2003.1.2.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.50 42.0 2.64e-01 96.6% 84.9%
3606266 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 39.0 2.49e-01 86.5% 27.8%