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hypothetical_protein_B1750_gp023

Euk-Vir

Noumeavirus

hypothetical_protein_B1750_gp023__YP_009345168__Noumeavirus__1955558

Identity

Accession:
YP_009345168 ↗
Protein ID:
hypothetical_protein_B1750_gp023
Kingdom:
euk

Quality

80.2 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Noumeavirus

TaxID: 1955558

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-40_91-127
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jbjA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 44.0 4.20e-01 84.4% 79.8%
3o4oC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 42.0 3.84e-01 83.1% 84.1%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 36.0 3.87e-01 85.7% 83.1%
5cyxA01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.53 40.0 4.01e-01 84.4% 95.1%
5k6uA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.84e-01 83.1% 92.2%
4zi8B01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.53 39.0 3.63e-01 83.1% 86.9%
5t89X04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.79e-01 85.7% 92.5%
4a2aA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.51 35.0 3.78e-01 96.1% 86.2%
6x4tA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.71e-01 80.5% 100.0%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
185207 11.1.1.227 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arylsulfotran_N 0.59 46.0 4.25e-01 85.7% 93.1%
3902618 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 44.0 4.07e-01 81.8% 67.6%
3256587 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 40.0 4.30e-01 74.0% 92.3%
3511267 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.56 43.0 4.05e-01 83.1% 89.5%
3595446 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 37.0 3.36e-01 70.1% 80.0%
4306285 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 29.0 3.09e-01 83.1% 58.6%
5065631 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.52 39.0 4.24e-01 84.4% 95.4%
5027812 375.1.1.5 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L44 0.52 37.0 3.49e-01 74.0% 89.2%
3512623 300.1.1.2 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DNase_II 0.52 45.0 3.32e-01 100.0% 75.9%
3527855 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.86e-01 85.7% 87.1%
D2 medium residues 41-90
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5bncB01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.76 67.0 4.75e-01 100.0% 56.4%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.71 59.0 4.30e-01 100.0% 55.0%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.70 59.0 4.56e-01 100.0% 66.1%
3h96C00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 55.0 4.20e-01 100.0% 63.8%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 54.0 4.07e-01 100.0% 51.4%
1t9mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 52.0 3.59e-01 100.0% 54.4%
4uuwA01 3.40.980.10 Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain 0.64 52.0 3.63e-01 94.0% 40.1%
2jc4A00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.57 42.0 2.72e-01 80.0% 56.2%
3h5lA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 43.0 2.84e-01 88.0% 32.3%
2kkuA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.55 44.0 3.29e-01 92.0% 71.9%
3mr7A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.55 44.0 3.10e-01 92.0% 69.9%
4c9yA00 1.10.10.1890 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like 0.55 41.0 3.20e-01 86.0% 77.2%
1kytA02 3.90.1070.10 Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › 0.54 44.0 4.09e-01 90.0% 76.6%
1fs5A00 3.40.50.1360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 37.0 2.45e-01 76.0% 96.6%
1t62B00 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.52 41.0 3.06e-01 100.0% 70.6%
1xneA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.51 40.0 3.34e-01 100.0% 75.2%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 45.0 2.96e-01 100.0% 98.5%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5018015 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.76 66.0 4.77e-01 100.0% 57.2%
3717373 213.1.1.73 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › IDM1_C 0.68 59.0 3.91e-01 100.0% 41.5%
5078868 207.7.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Alpha subunit of glutamate synthase-C › Alpha subunit of glutamate synthase-C › GXGXG 0.62 52.0 3.52e-01 100.0% 31.6%
3398695 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.62 49.0 3.43e-01 100.0% 58.7%
3366122 12.1.1.48 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Laman-like_dom 0.61 52.0 3.79e-01 100.0% 60.0%
5025736 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 51.0 4.12e-01 100.0% 49.5%
4431199 1.1.5.9 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C 0.60 47.0 3.30e-01 100.0% 56.2%
3738589 302.4.1.0 ↗ a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.59 50.0 3.95e-01 100.0% 45.7%
3719199 246.3.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.59 45.0 2.76e-01 88.0% 68.5%
3516013 7523.1.1.15 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate 0.56 49.0 3.94e-01 100.0% 81.0%
4406356 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.52 41.0 3.16e-01 90.0% 64.0%
2565004 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.52 42.0 3.46e-01 92.0% 62.1%