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hypothetical_protein_B1750_gp388

Euk-Vir

Noumeavirus

hypothetical_protein_B1750_gp388__YP_009345533__Noumeavirus__1955558

Identity

Accession:
YP_009345533 ↗
Protein ID:
hypothetical_protein_B1750_gp388
Kingdom:
euk

Quality

83.5 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Noumeavirus

TaxID: 1955558

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-53
PDB
Domain cluster: rep: hypothetical_protein_GMAR_ORF57__YP_009310174__Golden_Marseillevirus__1720526__D1-51
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pltA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.66 53.0 3.58e-01 90.6% 69.2%
1jlcB03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.64 52.0 4.01e-01 96.2% 40.6%
3w1oA00 3.40.1760.20 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical protein yfbM fold › 0.63 50.0 4.04e-01 98.1% 43.5%
2lqlA02 1.10.287.2900 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 42.0 4.51e-01 75.5% 84.1%
1zmbA02 6.10.170.10 Special › Helix non-globular › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › 0.62 40.0 4.51e-01 75.5% 100.0%
3h0dB02 1.10.1200.150 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain 0.60 50.0 4.43e-01 96.2% 79.0%
3w3sA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.60 48.0 3.03e-01 100.0% 46.9%
3ledA01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.60 46.0 3.05e-01 84.9% 79.5%
4acyA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.59 50.0 3.07e-01 96.2% 59.8%
2g5dA01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.56 45.0 3.22e-01 100.0% 83.6%
1olxB02 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.55 49.0 3.30e-01 98.1% 96.4%
2q0yA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 41.0 3.16e-01 86.8% 61.6%
3f2bA05 6.10.50.10 Special › Helix non-globular › Insulin-like, subunit E › 0.54 37.0 3.88e-01 84.9% 79.2%
2e1vA02 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.53 41.0 2.77e-01 84.9% 85.5%
2jmlA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.53 38.0 3.40e-01 79.2% 97.5%
1cf7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 3.66e-01 92.5% 68.3%
1sseB00 1.10.238.100 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › YAP1 redox domain. Chain B 0.51 39.0 3.60e-01 100.0% 61.6%
3dsbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 39.0 3.33e-01 94.3% 78.2%
1s3zA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 40.0 3.02e-01 94.3% 52.4%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3187413 3755.3.1.452 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF6594 0.65 45.0 4.35e-01 92.5% 65.0%
3782416 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.64 50.0 3.01e-01 90.6% 28.3%
3655270 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.62 44.0 2.82e-01 77.4% 38.2%
3897876 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.62 51.0 3.45e-01 94.3% 34.1%
3509190 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.60 48.0 4.12e-01 88.7% 62.4%
3740662 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 50.0 3.03e-01 96.2% 32.5%
4633196 213.1.1.57 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › BCCIP 0.58 48.0 3.21e-01 100.0% 76.0%
3473553 300.1.1.1 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc 0.58 48.0 3.28e-01 100.0% 70.9%
5033603 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.58 43.0 2.96e-01 86.8% 79.8%
3504009 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.57 49.0 4.25e-01 100.0% 68.2%
3422907 2003.1.1.17 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_Gly3P_dh_N 0.57 47.0 3.14e-01 100.0% 22.4%
3215295 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.55 42.0 3.81e-01 88.7% 96.2%
4940898 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.54 45.0 3.08e-01 100.0% 24.4%
4995817 101.15.1.4 ↗ alpha arrays › HTH › LysM domain › LysM domain › Phage_gp53 0.51 44.0 4.05e-01 100.0% 85.7%
3785640 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.50 37.0 2.99e-01 83.0% 96.5%
D2 medium residues 54-111
PDB
Domain cluster: rep: hypothetical_protein_A3303_gp127__YP_009238632__Brazilian_marseillevirus__1813599__D57-111