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hypothetical_protein_B1750_gp406
Euk-VirNoumeavirus
hypothetical_protein_B1750_gp406__YP_009345551__Noumeavirus__1955558
Identity
- Accession:
- YP_009345551 ↗
- Protein ID:
- hypothetical_protein_B1750_gp406
- Kingdom:
- euk
Quality
73.1
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Marseilleviridae›
Marseillevirus›
Noumeavirus
TaxID: 1955558
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-64
Domain cluster:
rep: NC_041929.1__YP_009601140.1__FDH46_gp015__00015__D2-55
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1svdM00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.68 | 56.0 | 4.71e-01 | 100.0% | 53.7% |
| 5mz2I00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.67 | 55.0 | 4.31e-01 | 100.0% | 41.7% |
| 4e6zA01 | 3.40.1350.100 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.67 | 59.0 | 4.83e-01 | 100.0% | 55.0% |
| 5yjlB01 | 3.30.460.30 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Glutamyl-tRNA reductase, N-terminal domain | 0.65 | 55.0 | 4.13e-01 | 96.8% | 58.4% |
| 5hccB03 | 2.60.40.1940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 54.0 | 4.44e-01 | 100.0% | 55.4% |
| 1zldA00 | 2.60.40.1920 | Mainly Beta › Sandwich › Immunoglobulin-like › Proteinaceous host-selective toxin ToxA | 0.61 | 47.0 | 4.06e-01 | 98.4% | 52.0% |
| 4ncdA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 53.0 | 4.33e-01 | 100.0% | 56.8% |
| 2irmA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.60 | 46.0 | 2.91e-01 | 84.1% | 43.1% |
| 2hhpA03 | 3.30.70.590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain | 0.58 | 49.0 | 3.86e-01 | 100.0% | 90.7% |
| 3egrA00 | 3.10.20.520 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B | 0.57 | 44.0 | 4.40e-01 | 100.0% | 87.3% |
| 1ty0B01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.57 | 48.0 | 3.83e-01 | 95.2% | 75.0% |
| 3nziA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 43.0 | 3.70e-01 | 100.0% | 50.0% |
| 1nezH00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 49.0 | 4.01e-01 | 100.0% | 63.3% |
| 2hgsA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.56 | 41.0 | 3.47e-01 | 100.0% | 45.9% |
| 2hfqA00 | 3.10.510.10 | Alpha Beta › Roll › NE1680-like fold › NE1680-like | 0.55 | 44.0 | 4.06e-01 | 96.8% | 67.1% |
| 4a18X01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.55 | 45.0 | 4.31e-01 | 100.0% | 93.7% |
| 1va9A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 41.0 | 3.45e-01 | 100.0% | 44.3% |
| 7y8sA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 41.0 | 3.69e-01 | 100.0% | 56.8% |
| 3hvnA01 | 3.90.840.10 | Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain | 0.54 | 45.0 | 3.44e-01 | 100.0% | 39.0% |
| 1f0iA01 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.54 | 41.0 | 2.95e-01 | 85.7% | 39.3% |
| 2lxxA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.54 | 44.0 | 3.46e-01 | 96.8% | 44.1% |
| 3b49A00 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.54 | 43.0 | 3.14e-01 | 93.7% | 85.8% |
| 3kysA00 | 2.70.50.80 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › | 0.54 | 47.0 | 3.30e-01 | 100.0% | 34.6% |
| 1vwxS01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.54 | 42.0 | 4.13e-01 | 100.0% | 83.1% |
| 2fhzA00 | 3.30.190.30 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › | 0.53 | 44.0 | 3.86e-01 | 100.0% | 60.4% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.53 | 44.0 | 4.18e-01 | 100.0% | 80.3% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.53 | 44.0 | 3.80e-01 | 100.0% | 62.4% |
| 1m0wA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.52 | 41.0 | 3.49e-01 | 100.0% | 50.9% |
| 2v3sA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 41.0 | 3.72e-01 | 93.7% | 100.0% |
| 2wraA00 | 2.60.120.400 | Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin | 0.52 | 42.0 | 3.59e-01 | 100.0% | 88.5% |
| 1gpcA00 | 3.90.198.10 | Alpha Beta › Alpha-Beta Complex › Replication Fork Single-Stranded DNA Binding Protein › Replication Fork Single-Stranded Dna Binding Protein | 0.52 | 43.0 | 3.08e-01 | 100.0% | 28.4% |
| 2mraA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.51 | 41.0 | 3.44e-01 | 100.0% | 50.4% |
| 1x9tA02 | 3.90.1620.10 | Alpha Beta › Alpha-Beta Complex › adenovirus 2 penton base, domain 2 › adenovirus 2 penton base, domain 2 | 0.51 | 42.0 | 2.82e-01 | 96.8% | 43.9% |
| 2qsdA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.50 | 38.0 | 3.80e-01 | 96.8% | 82.1% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3734833 | 304.14.1.0 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) | 0.73 | 63.0 | 5.60e-01 | 96.8% | 100.0% |
| 3721982 | 304.14.1.0 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) | 0.72 | 62.0 | 5.41e-01 | 96.8% | 98.9% |
| 2157197 | 302.2.1.1 ↗ | a+b two layers › Reverse ferredoxin › RuBisCO, small subunit › RuBisCO, small subunit › RuBisCO_small | 0.67 | 55.0 | 4.31e-01 | 100.0% | 41.7% |
| 5005180 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.66 | 58.0 | 4.66e-01 | 98.4% | 100.0% |
| 3628875 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.61 | 53.0 | 4.66e-01 | 98.4% | 98.9% |
| 5034364 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.61 | 53.0 | 4.29e-01 | 100.0% | 96.8% |
| 3939200 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.60 | 52.0 | 4.17e-01 | 100.0% | 96.2% |
| 4027131 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.59 | 38.0 | 3.44e-01 | 71.4% | 45.6% |
| 4002986 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.59 | 43.0 | 3.49e-01 | 79.4% | 56.8% |
| 3685220 | 11.8.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like › Bys1 | 0.59 | 43.0 | 3.23e-01 | 100.0% | 31.1% |
| 3539303 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.58 | 47.0 | 3.39e-01 | 100.0% | 29.5% |
| 4032409 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 47.0 | 4.55e-01 | 100.0% | 85.3% |
| 3451695 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.56 | 40.0 | 3.61e-01 | 77.8% | 70.0% |
| 3414535 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.56 | 46.0 | 3.44e-01 | 100.0% | 100.0% |
| 3656089 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.56 | 48.0 | 3.10e-01 | 100.0% | 94.1% |
| 5012895 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.55 | 43.0 | 4.57e-01 | 93.7% | 100.0% |
| 3969420 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 48.0 | 3.39e-01 | 100.0% | 52.9% |
| 3507240 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 46.0 | 3.64e-01 | 100.0% | 57.2% |
| 2006900 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.54 | 42.0 | 3.69e-01 | 100.0% | 53.8% |
| 4029036 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.54 | 46.0 | 4.20e-01 | 100.0% | 73.3% |
| 4644377 | 223.1.1.122 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HisKA | 0.54 | 42.0 | 2.88e-01 | 87.3% | 66.1% |
| 4273924 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.54 | 42.0 | 2.96e-01 | 85.7% | 71.2% |
| 3609926 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.54 | 45.0 | 3.71e-01 | 100.0% | 54.6% |
| 4939739 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.54 | 42.0 | 4.31e-01 | 98.4% | 98.3% |
| 4967222 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.54 | 42.0 | 4.28e-01 | 98.4% | 96.7% |
| 3170806 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.54 | 47.0 | 3.51e-01 | 100.0% | 61.8% |
| 5004080 | 886.1.1.2 ↗ | a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like | 0.54 | 42.0 | 3.39e-01 | 90.5% | 99.3% |
| 4128974 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.53 | 44.0 | 4.18e-01 | 100.0% | 80.0% |
| 4003721 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.53 | 42.0 | 2.53e-01 | 92.1% | 26.8% |
| 3316508 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.53 | 44.0 | 3.49e-01 | 100.0% | 48.0% |
| 3411558 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.53 | 43.0 | 3.52e-01 | 100.0% | 49.3% |
| 5073914 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 33.0 | 2.74e-01 | 73.0% | 32.0% |
| 4084879 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.53 | 43.0 | 4.04e-01 | 100.0% | 75.3% |
| 3905094 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.52 | 42.0 | 3.49e-01 | 100.0% | 51.1% |
| 3793097 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.52 | 45.0 | 3.67e-01 | 100.0% | 92.8% |
| 2006886 | 302.4.1.1 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C | 0.52 | 42.0 | 3.42e-01 | 92.1% | 70.3% |
| 3478358 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 44.0 | 3.61e-01 | 100.0% | 53.6% |
| 2099462 | 302.4.1.1 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C | 0.51 | 42.0 | 3.46e-01 | 96.8% | 71.3% |
| 3222162 | 302.4.1.1 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C | 0.51 | 41.0 | 3.57e-01 | 96.8% | 76.4% |
| 3502029 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.51 | 42.0 | 2.63e-01 | 100.0% | 90.0% |
| 3273223 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.50 | 43.0 | 3.41e-01 | 100.0% | 68.1% |
| 3582833 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.50 | 42.0 | 3.61e-01 | 100.0% | 63.6% |