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hypothetical_protein_BNJ_00029

Euk-Vir

Kaumoebavirus_Viruses.

hypothetical_protein_BNJ_00029__YP_009352452__Kaumoebavirus_Viruses.__X

Identity

Accession:: YP_009352452 ↗
Protein ID:: hypothetical_protein_BNJ_00029
Kingdom:: euk

Quality

79.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 6-73

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4jykA01	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.71	37.0	4.05e-01	72.1%	60.3%
2kfdA00	1.10.10.440	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain	0.58	35.0	3.59e-01	72.1%	61.5%
2ip6A00	1.20.1440.140	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) ›	0.55	43.0	3.97e-01	83.8%	79.3%
3um7B01	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.54	39.0	3.48e-01	82.4%	53.6%
3vhlA02	1.20.58.740	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C	0.54	44.0	3.70e-01	91.2%	80.0%
1ku9B01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	40.0	3.69e-01	83.8%	78.2%
4pxoA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.51	41.0	3.34e-01	88.2%	74.0%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3286520	101.1.1.5 ↗	alpha arrays › HTH › HTH › Three-helical HTH › TetR_N	0.68	37.0	3.80e-01	70.6%	53.8%
3705705	103.4.1.2 ↗	alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › TFIIS_M	0.67	57.0	4.85e-01	97.1%	57.4%
3638685	103.4.1.0 ↗	alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein	0.63	50.0	3.94e-01	86.8%	92.4%
3471028	101.1.4.0 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like	0.57	44.0	3.95e-01	86.8%	79.0%
3824261	143.1.1.2 ↗	alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain › PABC_AtC3H46	0.56	38.0	3.89e-01	70.6%	86.2%
3173369	5059.1.1.3 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT	0.56	47.0	2.95e-01	92.6%	71.3%
4945692	192.15.1.0 ↗	alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains	0.56	40.0	3.54e-01	75.0%	83.2%
3944499	6050.1.1.0 ↗	a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone	0.53	37.0	3.47e-01	83.8%	58.8%
3398819	3226.1.1.2 ↗	alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › Sulfate_transp	0.53	45.0	2.80e-01	100.0%	92.8%
3233696	4970.1.1.0 ↗	alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I	0.52	34.0	3.59e-01	70.6%	75.0%
1866769	219.1.1.68 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › RickCE_cat	0.52	45.0	3.07e-01	100.0%	57.3%

D2 medium residues 79-124

PDB

Domain cluster: rep: putative_transcription_elongation_factor_S-II-related_protein__YP_009507517__Heterosigma_akashiwo_virus_01__97195__D153-194

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01096.24 best	Zn_ribbon_TFIIS	49.9	3.00e-13	84.8%	94.9%