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hypothetical_protein_BNJ_00111

Euk-Vir

Kaumoebavirus_Viruses.

hypothetical_protein_BNJ_00111__YP_009352526__Kaumoebavirus_Viruses.__X

Identity

Accession:
YP_009352526 ↗
Protein ID:
hypothetical_protein_BNJ_00111
Kingdom:
euk

Quality

67.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 36-171
PDB
Domain cluster: rep: BML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00169__D1-120
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19835.7 best SegE_GIY-YIG 24.7 3.30e-05 69.1% 56.1%
D2 high residues 211-269
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6yiiA01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.72 58.0 3.90e-01 89.8% 48.7%
8in8C01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.69 60.0 3.94e-01 100.0% 26.7%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.68 55.0 5.11e-01 100.0% 70.1%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.68 50.0 4.18e-01 100.0% 44.8%
1h8mA00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.67 54.0 4.14e-01 100.0% 37.9%
4cllA01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.66 52.0 3.60e-01 88.1% 45.7%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.66 50.0 4.17e-01 100.0% 44.1%
2dixA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.66 53.0 4.87e-01 100.0% 67.9%
1jpdX01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.64 53.0 4.63e-01 100.0% 92.9%
3cyjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.62 53.0 4.28e-01 100.0% 86.1%
1okjB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 45.0 3.62e-01 98.3% 37.0%
3ostA00 3.30.310.220 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Fungal kinase associated-1 domain 0.61 50.0 4.05e-01 93.2% 94.1%
3pieC05 2.170.260.40 Mainly Beta › Beta Complex › paz domain › 0.61 42.0 3.00e-01 100.0% 25.1%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 47.0 4.47e-01 100.0% 73.2%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.59 48.0 4.50e-01 98.3% 87.3%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.58 40.0 3.74e-01 74.6% 55.8%
3ib5A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.57 46.0 2.84e-01 88.1% 40.1%
2qx2A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.56 46.0 2.86e-01 88.1% 49.7%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 48.0 3.80e-01 100.0% 49.6%
4hn3A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.54 37.0 2.36e-01 72.9% 36.1%
5gaeG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.54 48.0 4.35e-01 100.0% 95.1%
3pf7B00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.54 44.0 2.60e-01 89.8% 55.5%
5nckA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 40.0 3.47e-01 100.0% 48.6%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.53 41.0 3.00e-01 88.1% 38.5%
6baoA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 46.0 3.52e-01 100.0% 45.5%
3o2iA00 3.30.70.2710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 37.0 3.30e-01 76.3% 53.8%
4l80D00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.53 44.0 2.75e-01 94.9% 68.9%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.52 44.0 3.42e-01 100.0% 93.2%
1cukA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 37.0 3.61e-01 76.3% 98.5%
2z5bB01 3.30.230.90 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.51 43.0 3.45e-01 93.2% 54.6%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.51 40.0 3.27e-01 100.0% 86.9%
1f20A02 1.20.990.10 Mainly Alpha › Up-down Bundle › NADPH-cytochrome p450 Reductase; Chain A, domain 3 › NADPH-cytochrome p450 Reductase; Chain A, domain 3 0.51 35.0 2.70e-01 74.6% 96.9%
2npnA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.51 42.0 3.48e-01 93.2% 63.3%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4026211 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.82 63.0 6.76e-01 98.3% 98.0%
4030681 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.81 61.0 5.90e-01 94.9% 72.3%
4024768 330.3.1.7 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › AP2 0.80 63.0 6.46e-01 100.0% 90.9%
4027687 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.79 62.0 6.46e-01 100.0% 90.9%
4023919 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.79 59.0 5.78e-01 93.2% 73.8%
4028791 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.78 62.0 6.37e-01 100.0% 90.9%
4028013 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.78 61.0 5.63e-01 100.0% 66.7%
4029439 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.76 60.0 5.72e-01 100.0% 73.9%
4110960 2485.2.1.1 ↗ a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.75 67.0 5.71e-01 100.0% 91.6%
4007983 252.2.1.5 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 0.73 59.0 5.10e-01 100.0% 56.8%
4009814 252.2.1.5 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 0.71 58.0 5.70e-01 98.3% 84.6%
5013176 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.70 50.0 4.60e-01 100.0% 58.7%
5080802 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.70 59.0 5.97e-01 100.0% 100.0%
3984933 252.2.1.5 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 0.70 58.0 5.12e-01 100.0% 62.2%
5029914 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.68 54.0 5.53e-01 88.1% 98.2%
4996855 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 53.0 4.23e-01 100.0% 41.6%
4054729 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.67 58.0 5.41e-01 100.0% 93.3%
4995163 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.66 50.0 3.37e-01 100.0% 20.8%
3963057 323.1.1.5 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.65 58.0 4.19e-01 100.0% 44.2%
3603992 330.10.1.1 ↗ a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO 0.64 53.0 4.66e-01 100.0% 60.0%
3693249 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.64 57.0 4.42e-01 100.0% 70.0%
3404941 220.1.1.15 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5 0.64 53.0 3.89e-01 96.6% 33.5%
3830643 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.63 54.0 4.69e-01 100.0% 63.3%
3940020 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 52.0 4.11e-01 100.0% 43.1%
3438053 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.62 44.0 4.08e-01 74.6% 94.7%
4183868 878.1.1.1 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.62 44.0 3.97e-01 74.6% 55.7%
5012583 11.1.4.106 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PEGA 0.61 40.0 3.00e-01 71.2% 24.8%
3695979 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.61 49.0 3.99e-01 89.8% 71.8%
3962245 881.1.1.26 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF7373 0.61 51.0 4.20e-01 100.0% 56.7%
3211024 221.13.1.0 ↗ a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.59 51.0 4.25e-01 98.3% 60.0%
4927936 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 45.0 4.10e-01 93.2% 60.0%
3194095 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.59 49.0 4.29e-01 100.0% 76.8%
5030959 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.59 38.0 3.54e-01 83.1% 50.0%
3197622 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.58 45.0 3.81e-01 89.8% 48.6%
3648413 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 39.0 3.43e-01 74.6% 45.6%
4599318 2.1.1.299 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S12 0.58 42.0 3.92e-01 88.1% 60.0%
4343392 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 43.0 3.64e-01 84.7% 72.7%
3360324 2485.1.1.12 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SCO1-SenC 0.56 46.0 3.67e-01 93.2% 88.5%
3614844 220.1.1.15 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5 0.56 43.0 3.42e-01 89.8% 38.6%
3743261 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 47.0 3.84e-01 100.0% 75.8%
4964487 218.1.1.12 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › PF26684 0.56 45.0 3.89e-01 100.0% 89.1%
3639738 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.55 44.0 4.26e-01 89.8% 79.1%
3924083 2484.1.1.204 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 0.55 45.0 3.37e-01 98.3% 34.7%
4647627 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.54 38.0 2.63e-01 74.6% 32.1%
4364399 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.54 47.0 4.08e-01 96.6% 95.6%
3352475 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.54 43.0 4.15e-01 98.3% 88.0%
3466584 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 41.0 4.03e-01 88.1% 86.2%
1758788 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.52 41.0 3.23e-01 100.0% 40.7%
3173242 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.51 45.0 3.57e-01 98.3% 89.2%
3916989 244.1.1.6 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase 0.51 44.0 2.64e-01 96.6% 62.4%
5062351 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 40.0 3.45e-01 100.0% 79.1%