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hypothetical_protein_BNJ_00233

Euk-Vir

Kaumoebavirus_Viruses.

hypothetical_protein_BNJ_00233__YP_009352642__Kaumoebavirus_Viruses.__X

Identity

Accession:
YP_009352642 ↗
Protein ID:
hypothetical_protein_BNJ_00233
Kingdom:
euk

Quality

54.8 mean pLDDT

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-78
PDB
Domain cluster: rep: NC_031927.1__YP_009323018.1__BOW86_gp085__00085__D3-79
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01541.31 best GIY-YIG 31.0 3.50e-07 100.0% 87.2%
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.83 77.0 7.20e-01 100.0% 87.0%
3oqgA00 3.40.1440.50 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.73 56.0 4.31e-01 83.1% 47.7%
1qr4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 44.0 4.20e-01 89.6% 55.2%
2kqaA00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.65 49.0 4.23e-01 97.4% 51.7%
3fw6A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.64 36.0 3.17e-01 80.5% 36.8%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.64 38.0 4.07e-01 100.0% 68.2%
2d7nA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 38.0 3.81e-01 79.2% 58.4%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.64 44.0 3.96e-01 84.4% 50.5%
2pstX00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.62 38.0 4.08e-01 100.0% 73.8%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.62 43.0 3.71e-01 80.5% 47.0%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 38.0 4.13e-01 77.9% 74.2%
3rp6A02 3.30.9.30 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › 0.61 51.0 3.69e-01 93.5% 47.1%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 38.0 3.52e-01 76.6% 52.1%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.59 39.0 3.06e-01 77.9% 31.7%
2cuwA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.58 43.0 4.25e-01 79.2% 98.8%
1xvsA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.58 40.0 3.43e-01 80.5% 45.5%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.57 40.0 3.50e-01 80.5% 47.5%
3b8fB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 40.0 3.26e-01 84.4% 39.4%
2f1eA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.57 40.0 3.45e-01 80.5% 48.3%
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 41.0 3.46e-01 85.7% 43.7%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 35.0 3.76e-01 76.6% 72.7%
3vzbB02 2.60.200.40 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.56 43.0 3.22e-01 83.1% 99.5%
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 38.0 4.09e-01 89.6% 80.9%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 42.0 3.87e-01 85.7% 61.5%
4uzgA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 41.0 3.26e-01 79.2% 42.3%
3pjyA00 2.60.120.1140 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF192 0.55 39.0 3.36e-01 75.3% 96.1%
1wmdA02 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.55 38.0 3.27e-01 80.5% 47.0%
3nyiB01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 43.0 3.48e-01 88.3% 89.8%
1o54A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.54 39.0 4.06e-01 76.6% 81.9%
2lw3A00 2.60.40.2880 Mainly Beta › Sandwich › Immunoglobulin-like › MmpS1-5, C-terminal soluble domain 0.53 32.0 3.04e-01 79.2% 48.9%
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.53 35.0 3.10e-01 79.2% 46.0%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.52 38.0 3.13e-01 81.8% 43.1%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.52 34.0 3.29e-01 79.2% 56.5%
2odpA03 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 37.0 2.97e-01 76.6% 47.3%
1yn3A00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 38.0 3.53e-01 77.9% 65.3%
3kysA00 2.70.50.80 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › 0.52 38.0 2.81e-01 79.2% 37.0%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 40.0 3.15e-01 84.4% 44.6%
1rm6A05 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.51 39.0 3.14e-01 87.0% 86.1%
2d93A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 32.0 2.74e-01 71.4% 36.6%
5z3gZ01 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.50 34.0 2.93e-01 70.1% 71.0%
1nbwA04 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 37.0 3.15e-01 79.2% 72.7%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4344289 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.86 81.0 6.63e-01 100.0% 64.6%
3496147 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.84 78.0 7.07e-01 98.7% 92.0%
77927 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.84 77.0 7.18e-01 100.0% 85.1%
4158495 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.81 71.0 6.71e-01 100.0% 80.0%
4981567 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.74 67.0 5.67e-01 100.0% 68.8%
5014007 3115.2.1.0 ↗ a+b two layers › GP2-like › GP2 › GP2 0.74 48.0 5.51e-01 85.7% 92.7%
4346148 821.1.1.12 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF29812 0.73 66.0 5.60e-01 100.0% 63.2%
3877933 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 39.0 3.71e-01 79.2% 54.4%
4004704 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.61 37.0 4.26e-01 77.9% 100.0%
3969006 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.61 36.0 4.21e-01 77.9% 100.0%
3827210 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.59 43.0 3.66e-01 77.9% 72.6%
3925553 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 43.0 3.72e-01 80.5% 68.5%
3422908 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.57 40.0 3.79e-01 74.0% 98.9%
3225139 10.4.1.9 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_2 0.57 34.0 2.99e-01 81.8% 40.0%
5022263 322.1.1.2 ↗ a+b two layers › HPr-like › HPr-like › HPr-like › 3H 0.56 39.0 3.54e-01 74.0% 51.8%
3941506 2002.1.1.16 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.56 44.0 2.96e-01 88.3% 95.5%
5051602 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.56 47.0 3.06e-01 98.7% 31.5%
4317810 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.55 40.0 3.44e-01 79.2% 82.2%
4547229 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.55 47.0 3.84e-01 98.7% 81.3%
4002865 10.32.1.6 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › P_proprotein 0.55 39.0 3.25e-01 80.5% 41.4%
3595003 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.53 37.0 4.03e-01 94.8% 93.3%
4026408 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.53 39.0 3.59e-01 83.1% 60.0%
3440477 2484.1.1.15 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GDA1_CD39 0.53 38.0 3.63e-01 77.9% 65.3%
3218185 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 43.0 3.11e-01 94.8% 31.6%
2631954 206.1.1.16 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › IucA_IucC,FhuF 0.52 44.0 2.81e-01 98.7% 46.4%
454285 206.1.1.16 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › IucA_IucC,FhuF 0.52 44.0 2.82e-01 98.7% 47.7%
5065444 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.52 43.0 3.90e-01 90.9% 84.8%
3231131 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 44.0 4.06e-01 100.0% 92.4%
5032056 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.52 38.0 3.52e-01 80.5% 85.4%
1834078 206.1.1.16 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › IucA_IucC,FhuF 0.51 43.0 2.77e-01 98.7% 41.6%
3939315 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 42.0 3.77e-01 96.1% 84.3%
3404684 10.12.1.84 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom 0.51 43.0 3.23e-01 98.7% 88.1%
4623131 206.1.1.16 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › IucA_IucC,FhuF 0.51 43.0 2.75e-01 98.7% 43.9%
3783481 11.1.1.642 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_Pom152_1 0.50 40.0 3.40e-01 84.4% 58.3%
3935404 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.50 35.0 3.34e-01 72.7% 96.7%
D2 high residues 134-240
PDB